<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">

    <parent>
        <groupId>uk.ac.ebi.interpro.scan</groupId>
        <artifactId>interproscan</artifactId>
        <version>5.19-58.0</version>
    </parent>

    <modelVersion>4.0.0</modelVersion>
    <artifactId>jms-implementation</artifactId>
    <version>5.19-58.0</version>

    <packaging>jar</packaging>

    <name>InterProScan JMS Implementation Module</name>
    <description>InterProScan JMS Implementation Module</description>
    <url>http://www.ebi.ac.uk/interpro/</url>

    <licenses>
        <license>
            <name>The Apache Software License, Version 2.0</name>
            <url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
            <distribution>repo</distribution>
        </license>
    </licenses>

    <organization>
        <name>EMBL - European Bioinformatics Institute</name>
        <url>http://www.ebi.ac.uk/</url>
    </organization>

    <properties>
        <mvn.worker.job.request.queue>worker_job_request_queue</mvn.worker.job.request.queue>
        <mvn.worker.highmem.job.request.queue>worker_highmem_job_request_queue</mvn.worker.highmem.job.request.queue>
        <mvn.worker.job.response.queue>worker_job_response_queue</mvn.worker.job.response.queue>
        <mvn.stats.queue>stats_queue</mvn.stats.queue>
        <mvn.monitor.queue>monitor_queue</mvn.monitor.queue>
        <mvn.worker.manager.topic>worker_manager_topic</mvn.worker.manager.topic>
        <mvn.worker.manager.response.queue>worker_manager_response_queue</mvn.worker.manager.response.queue>
        <mvn.ebi.interproscan5.support>support-mini-x86-32</mvn.ebi.interproscan5.support>

        <!-- 5.3.1 is the version we have been using stably for development.
        The previous stable version used is 5.5.0
        The latest version is 5.12.0  -->
        <apache.activemq.version>5.12.0</apache.activemq.version>
    </properties>

    <dependencies>

        <dependency>
            <groupId>uk.ac.ebi.interpro.scan</groupId>
            <artifactId>interproscan-management</artifactId>
            <version>5.19-58.0</version>
        </dependency>

        <dependency>
            <groupId>org.springframework</groupId>
            <artifactId>spring-jms</artifactId>
            <version>${spring.version}</version>
        </dependency>

        <dependency>
            <groupId>commons-cli</groupId>
            <artifactId>commons-cli</artifactId>
            <version>1.3.1</version>
        </dependency>

        <!-- Installer JDBC access to InterPro database -->

        <dependency>
            <groupId>com.oracle.jdbc</groupId>
            <artifactId>com.springsource.oracle.jdbc</artifactId>
            <version>${oracle.jdbc.version}</version>
        </dependency>

        <!-- JAXB tests -->

        <dependency>
            <groupId>javax.xml.bind</groupId>
            <artifactId>jaxb-api</artifactId>
            <version>${jaxb-api.version}</version>
        </dependency>

        <dependency>
            <groupId>org.codehaus.groovy</groupId>
            <artifactId>groovy</artifactId>
            <version>${groovy.version}</version>
        </dependency>

        <!-- JPA tests -->

        <dependency>
            <groupId>com.jgoodies</groupId>
            <artifactId>looks</artifactId>
            <version>2.2.2</version>
        </dependency>

        <dependency>
            <groupId>com.h2database</groupId>
            <artifactId>h2</artifactId>
            <version>${h2.database.version}</version>
        </dependency>
        <!-- Required for Quartz scheduling support. -->
        <dependency>
            <groupId>org.springframework</groupId>
            <artifactId>spring-context-support</artifactId>
            <version>${spring.version}</version>
        </dependency>

        <!-- PUBLICLY-AVAILABLE Maven repository downloads for Quartz:-->

        <dependency>
            <groupId>org.opensymphony.quartz</groupId>
            <artifactId>quartz-all</artifactId>
            <version>1.6.1</version>
        </dependency>

        <dependency>
            <groupId>commons-collections</groupId>
            <artifactId>commons-collections</artifactId>
            <version>3.2.2</version>
        </dependency>

        <!-- active mq -->
        <!-- either have the uber activel-all or have individual modules-->

        <dependency>
            <groupId>org.apache.activemq</groupId>
            <artifactId>activemq-spring</artifactId>
            <!--<artifactId>activemq-all</artifactId>-->
            <version>${apache.activemq.version}</version>

            <exclusions>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>slf4j-log4j12</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>slf4j-api</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>org.slf4j</groupId>
                    <artifactId>slf4j</artifactId>
                </exclusion>
                <exclusion>
                    <groupId>log4j</groupId>
                    <artifactId>log4j</artifactId>
                </exclusion>

            </exclusions>
            <!--<type>pom</type>-->
        </dependency>

        <!--<dependency>-->
            <!--<groupId>org.apache.activemq</groupId>-->
            <!--<artifactId>activemq-pool</artifactId>-->
            <!--<version>${apache.activemq.version}</version>-->
            <!--<exclusions>-->
            <!--<exclusion>-->
                <!--<groupId>org.slf4j</groupId>-->
                <!--<artifactId>slf4j-api</artifactId>-->
            <!--</exclusion>-->
            <!--</exclusions>-->
        <!--</dependency>-->

        <!--activemq-core has been replaced with activemq-client and activemq-broker-->

        <!--<dependency>-->
            <!--<groupId>org.apache.activemq</groupId>-->
            <!--<artifactId>activemq-broker</artifactId>-->
            <!--<version>${apache.activemq.version}</version>-->
        <!--</dependency>-->

         <!--<dependency>-->
            <!--<groupId>org.apache.activemq</groupId>-->
            <!--<artifactId>activemq-client</artifactId>-->
            <!--<version>${apache.activemq.version}</version>-->
        <!--</dependency>-->

        <dependency>
            <groupId>org.apache.geronimo.specs</groupId>
            <artifactId>geronimo-jms_1.1_spec</artifactId>
            <version>1.1.1</version>
        </dependency>

        <dependency>
            <groupId>org.apache.xbean</groupId>
            <artifactId>xbean-spring</artifactId>
            <version>4.4</version>
        </dependency>

        <dependency>
            <groupId>org.osgi</groupId>
            <artifactId>org.osgi</artifactId>
            <version>3.0.0</version>
        </dependency>

    </dependencies>

    <build>

        <resources>
            <resource>
                <directory>src/main/resources/</directory>
                <includes>
                    <include>persistence.xml</include>
                </includes>
                <filtering>true</filtering>
                <targetPath>META-INF</targetPath>
            </resource>
            <resource>
                <directory>src/main/resources/</directory>
                <excludes>
                    <exclude>persistence.xml</exclude>
                </excludes>
                <filtering>true</filtering>
            </resource>
        </resources>

        <testResources>
            <testResource>
                <directory>src/test/resources/</directory>
                <includes>
                    <include>persistence.xml</include>
                </includes>
                <filtering>true</filtering>
                <targetPath>META-INF</targetPath>
            </testResource>
            <testResource>
                <directory>src/test/resources/</directory>
                <excludes>
                    <exclude>persistence.xml</exclude>
                    <exclude>interpro.h2.db</exclude>
                    <exclude>interpro.zip</exclude>
                </excludes>
                <filtering>true</filtering>
            </testResource>
            <testResource>
                <directory>src/test/resources/</directory>
                <includes>
                    <include>interpro.h2.db</include>
                    <include>interpro.zip</include>
                </includes>
                <filtering>false</filtering>
            </testResource>
        </testResources>

        <plugins>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-jar-plugin</artifactId>
                <version>${maven-jar-plugin.version}</version>
                <configuration>
                    <archive>
                        <!--<index>true</index>-->
                        <manifest>
                            <mainClass>uk.ac.ebi.interpro.scan.jms.main.Run</mainClass>
                            <addClasspath>true</addClasspath>
                            <classpathPrefix>lib</classpathPrefix>
                        </manifest>
                    </archive>
                    <finalName>interproscan-5</finalName>
                </configuration>

            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>${maven-assembly-plugin.version}</version>
                <configuration>
                    <descriptors>
                        <descriptor>assembly.xml</descriptor>
                    </descriptors>
                    <finalName>interproscan-5</finalName>
                </configuration>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>single</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>

    <profiles>
        <profile>
            <id>installer</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.codehaus.mojo</groupId>
                        <artifactId>exec-maven-plugin</artifactId>
                        <version>${exec-maven-plugin.version}</version>
                        <executions>
                            <execution>
                                <goals>
                                    <goal>java</goal>
                                </goals>
                            </execution>
                        </executions>
                        <configuration>
                            <mainClass>uk.ac.ebi.interpro.scan.jms.main.Run</mainClass>
                            <commandlineArgs>-m installer</commandlineArgs>
                        </configuration>
                    </plugin>
                </plugins>
            </build>
        </profile>

        <profile>
            <id>amqstandalone</id>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.codehaus.mojo</groupId>
                        <artifactId>exec-maven-plugin</artifactId>
                        <version>${exec-maven-plugin.version}</version>
                        <executions>
                            <execution>
                                <goals>
                                    <goal>java</goal>
                                </goals>
                            </execution>
                        </executions>
                        <configuration>
                            <mainClass>uk.ac.ebi.interpro.scan.jms.main.Run</mainClass>
                            <commandlineArgs>-m amqstandalone -f src/test/resources/5k.fasta</commandlineArgs>
                        </configuration>
                    </plugin>
                </plugins>
            </build>
        </profile>

        <profile>
            <id>full_support-32bit</id>
            <properties>
                <mvn.ebi.interproscan5.support>/nfs/seqdb/production/interpro/production/interproscan-5/support
                </mvn.ebi.interproscan5.support>
            </properties>
        </profile>

        <profile>
            <id>full_support-64bit</id>
            <properties>
                <mvn.ebi.interproscan5.support>/nfs/seqdb/production/interpro/production/interproscan-5/support_64bit
                </mvn.ebi.interproscan5.support>
            </properties>
        </profile>

    </profiles>

</project>
