<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>se.lth.immun</groupId>
	<artifactId>MzML</artifactId>
	<version>1.3.4</version>
	<inceptionYear>2014</inceptionYear>
	<properties>
		<scala.version>2.10.6</scala.version>
	</properties>

	<dependencies>
		<dependency>
			<groupId>org.scala-lang</groupId>
			<artifactId>scala-library</artifactId>
			<version>${scala.version}</version>
		</dependency>


		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>4.9</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>commons-codec</groupId>
			<artifactId>commons-codec</artifactId>
			<version>1.9</version>
		</dependency>

		<!-- dependency> <groupId>org.apache.commons</groupId> <artifactId>commons-lang3</artifactId> 
			<version>3.0.1</version> </dependency -->

		<dependency>
			<groupId>org.scalatest</groupId>
			<artifactId>scalatest_2.10</artifactId>
			<version>2.0</version>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>se.lth.immun</groupId>
			<artifactId>Xml</artifactId>
			<version>1.2.1</version>
		</dependency>
		<dependency>
			<groupId>se.lth.immun</groupId>
			<artifactId>MsNumpress</artifactId>
			<version>0.1.20</version>
		</dependency>
	</dependencies>

	<build>
		<sourceDirectory>src/main/scala</sourceDirectory>
		<testSourceDirectory>src/test/scala</testSourceDirectory>

		<plugins>
			<plugin>
				<groupId>org.scala-tools</groupId>
				<artifactId>maven-scala-plugin</artifactId>
				<executions>
					<execution>
						<goals>
							<goal>compile</goal>
							<goal>testCompile</goal>
						</goals>
					</execution>
				</executions>
				<configuration>
					<scalaVersion>${scala.version}</scalaVersion>
				</configuration>
			</plugin>
			<plugin>
				<artifactId>maven-eclipse-plugin</artifactId>
				<configuration>
					<downloadSources>true</downloadSources>
					<buildcommands>
						<buildcommand>ch.epfl.lamp.sdt.core.scalabuilder</buildcommand>
					</buildcommands>
					<additionalProjectnatures>
						<projectnature>ch.epfl.lamp.sdt.core.scalanature</projectnature>
					</additionalProjectnatures>
					<classpathContainers>
						<classpathContainer>org.eclipse.jdt.launching.JRE_CONTAINER</classpathContainer>
						<classpathContainer>ch.epfl.lamp.sdt.launching.SCALA_CONTAINER</classpathContainer>
					</classpathContainers>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-plugin</artifactId>
				<version>2.9</version>
				<configuration>
					<!-- <debugForkedProcess>true</debugForkedProcess> -->
				</configuration>
			</plugin>

			<plugin>
				<artifactId>maven-surefire-plugin</artifactId>
				<version>2.9</version>
				<configuration>
					<includes>
						<include>**/*Test.*</include>
					</includes>
					<excludes>
						<exclude>**/*IntegrationTest.*</exclude>
						<exclude>**/*IT.*</exclude>
					</excludes>
					<!--<debugForkedProcess>true</debugForkedProcess> -->
				</configuration>
			</plugin>

			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-source-plugin</artifactId>
				<executions>
					<execution>
						<id>attach-sources</id>
						<goals>
							<goal>jar</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
		</plugins>
	</build>
	<name>se.lth.immun:MzML</name>
	<description>Fast sequential library for reading MzML. Handles all regular variants of the standard mzML format including .gz and numpress</description>
	<url>https://github.com/fickludd/proteomicore</url>
	<licenses>
		<license>
			<name>The Apache License, Version 2.0</name>
			<url>http://www.apache.org/licenses/LICENSE-2.0.txt</url>
		</license>
	</licenses>
	<developers>
		<developer>
			<name>Johan Teleman</name>
			<email>johan.teleman@immun.lth.se</email>
			<organization>Lund University</organization>
			<organizationUrl>http://www.immun.lth.se</organizationUrl>
		</developer>
	</developers>
	<scm>
		<connection>scm:git:git@github.com:fickludd/proteomicore.git</connection>
		<developerConnection>scm:git:git@github.com:fickludd/proteomicore.git</developerConnection>
		<url>git@github.com:fickludd/proteomicore.git</url>
	</scm>
	<distributionManagement>
		<snapshotRepository>
			<id>ossrh</id>
			<url>https://oss.sonatype.org/content/repositories/snapshots</url>
		</snapshotRepository>
	</distributionManagement>
</project>
