Package pro.parseq.vcf.utils

Interface Summary

Interface	Description
VcfParser	Interface for parsing VCF files
VcfReader	Interface for reading VCF files
VcfValidator<T extends VcfLine>	VCF file single line validator's contract

Class Summary

Class	Description
InputStreamVcfReader	VcfReader implementation based on BufferedReader
Validatable	Abstract class representing an entity that can be validated
VcfGrammar	Class to hold VCF specification properties (see VCFv4.2 specification for more details)
VcfParserImpl	VcfParser implementation based on VCFv4.2 specification

Enum Summary

Enum	Description
FaultTolerance	Enumeration for setting preferred VCF file parsing mode