| Package | Description |
|---|---|
| pro.parseq.vcf.fields | |
| pro.parseq.vcf.types | |
| pro.parseq.vcf.utils |
| Modifier and Type | Class and Description |
|---|---|
class |
Filter
Represents VCF FILTER meta-information field
|
class |
Format
Represents VCF FORMAT meta-information field
|
class |
Information
Represents VCF INFO meta-information field
|
| Modifier and Type | Class and Description |
|---|---|
class |
DataLine
Represents VCF data line
|
class |
Header
Represents VCF header line
|
class |
Metadata
Represents VCF meta-information line
|
| Modifier and Type | Method and Description |
|---|---|
List<VcfLine> |
VcfFile.getDataLines() |
List<VcfLine> |
VcfFile.getLines() |
| Modifier and Type | Method and Description |
|---|---|
boolean |
VcfFile.addDataLine(VcfLine dataLine) |
boolean |
VcfFile.addLine(VcfLine line) |
| Modifier and Type | Method and Description |
|---|---|
void |
VcfFile.setDataLines(List<VcfLine> dataLines) |
void |
VcfFile.setLines(List<VcfLine> lines) |
| Modifier and Type | Interface and Description |
|---|---|
interface |
VcfValidator<T extends VcfLine>
VCF file single line validator's contract
|
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