pro.parseq.vcf.types

Class DataLine

java.lang.Object

pro.parseq.vcf.types.VcfLine

pro.parseq.vcf.types.DataLine

public class DataLine
extends VcfLine

Represents VCF data line

Author:

Alexander Afanasyev aafanasyev@parseq.pro

Constructor Summary

Constructors

Constructor and Description
DataLine(String line, VcfFile metadata) Parses input VCF line against presented meta-information and constructs genetic variants described in the input line

Method Summary

Modifier and Type	Method and Description
protected Pattern	getPattern()
List<Variant>	getVariants()

Methods inherited from class pro.parseq.vcf.types.VcfLine

isValid, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DataLine

public DataLine(String line,
                VcfFile metadata)

Parses input VCF line against presented meta-information and constructs genetic variants described in the input line

Parameters:

line - String representing VCF data line

metadata - Meta-information to create genetic variant against

Method Detail

getVariants

public List<Variant> getVariants()

getPattern

protected Pattern getPattern()

Specified by:

getPattern in class VcfLine