Uses of Class
pro.parseq.vcf.fields.types.Genotype

Packages that use Genotype

Package	Description
pro.parseq.vcf.fields.types
pro.parseq.vcf.types

Uses of Genotype in pro.parseq.vcf.fields.types

Methods in pro.parseq.vcf.fields.types that return Genotype

Modifier and Type	Method and Description
static Genotype	Genotype.extractFor(int alleleNumber, String genotype) Allows to extract zygosity value from genotype format field (see VCFv4.2 specification for more details)
static Genotype	Genotype.valueOf(String name) Returns the enum constant of this type with the specified name.
static Genotype[]	Genotype.values() Returns an array containing the constants of this enum type, in the order they are declared.

Uses of Genotype in pro.parseq.vcf.types

Methods in pro.parseq.vcf.types that return Genotype

Modifier and Type	Method and Description
Genotype	Variant.getZygosityFor(String sampleName)
Genotype	Variant.putGenotype(String sampleName, Genotype zygosity)

Methods in pro.parseq.vcf.types that return types with arguments of type Genotype

Modifier and Type	Method and Description
Map<String,Genotype>	Variant.getGenotypes()

Methods in pro.parseq.vcf.types with parameters of type Genotype

Modifier and Type	Method and Description
Genotype	Variant.putGenotype(String sampleName, Genotype zygosity)

Method parameters in pro.parseq.vcf.types with type arguments of type Genotype

Modifier and Type	Method and Description
void	Variant.setGenotypes(Map<String,Genotype> genotypes)