pro.parseq.vcf.fields

Class Information

java.lang.Object

pro.parseq.vcf.types.VcfLine

pro.parseq.vcf.types.Metadata

pro.parseq.vcf.fields.Information

public class Information
extends Metadata

Represents VCF INFO meta-information field

Author:

Alexander Afanasyev aafanasyev@parseq.pro

Constructor Summary

Constructors

Constructor and Description
Information(String line)

Method Summary

Modifier and Type	Method and Description
String	getDescription()
String	getId()
String	getNumber()
protected Pattern	getPattern()
String	getSource()
InfoFieldType	getType()
List<? extends Serializable>	getValue(String value) Allows to extract field values from data lines
String	getVersion()
static boolean	isInformation(String line)
void	setDescription(String description)
void	setId(String id)
void	setNumber(String number)
void	setSource(String source)
void	setType(InfoFieldType type)
void	setVersion(String version)

Methods inherited from class pro.parseq.vcf.types.Metadata

getKey, getValue

Methods inherited from class pro.parseq.vcf.types.VcfLine

isValid, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Information

public Information(String line)

Method Detail

getId

public String getId()

setId

public void setId(String id)

getNumber

public String getNumber()

setNumber

public void setNumber(String number)

getType

public InfoFieldType getType()

setType

public void setType(InfoFieldType type)

getDescription

public String getDescription()

setDescription

public void setDescription(String description)

getSource

public String getSource()

setSource

public void setSource(String source)

getVersion

public String getVersion()

setVersion

public void setVersion(String version)

getValue

public List<? extends Serializable> getValue(String value)

Allows to extract field values from data lines

Parameters:

value - Data line INFO value specified for the field

Returns:

List of found values (see VCFv4.2 specification for more details)

getPattern

protected Pattern getPattern()

Overrides:

getPattern in class Metadata

isInformation

public static final boolean isInformation(String line)