Constant Field Values

Contents

• pro.parseq.*

pro.parseq.*

pro.parseq.vcf.utils.VcfGrammar

Modifier and Type	Constant Field	Value
public static final String	ALLELE_DELIMITER	","
public static final int	ALT_COLUMN_IDX	4
public static final int	CHROM_COLUMN_IDX	0
public static final String	COLUMN_DELIMITER	"\\t"
public static final int	FILTER_COLUMN_IDX	6
public static final String	FILTER_DELIMITER	";"
public static final String	FILTER_PASSED	"PASS"
public static final int	FORMAT_COLUMN_IDX	8
public static final String	FORMAT_DELIMITER	":"
public static final String	GENOTYPE_FIELD	"GT"
public static final int	ID_COLUMN_IDX	2
public static final String	ID_DELIMITER	";"
public static final int	INFO_COLUMN_IDX	7
public static final String	INFO_DELIMITER	";"
public static final String	INFO_KEY_VALUE_DELIMITER	"="
public static final String	INFO_VALUE_DELIMITER	","
public static final int	MANDATORY_COLUMNS_NUMBER	8
public static final String	MISSING_VALUE	"."
public static final int	POS_COLUMN_IDX	1
public static final int	QUAL_COLUMN_IDX	5
public static final int	REF_COLUMN_IDX	3
public static final String	REFERENCE_ALLELE	"0"
public static final String	UNBOUNDED_VALUE	"."
public static final String	VALUE_PER_ALLELE	"A"
public static final String	VALUE_PER_ALLELE_WITH_REF	"R"
public static final String	VALUE_PER_GENOTYPE	"G"