<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>org.reactome.base</groupId>
    <artifactId>reactome-base</artifactId>
    <version>2.0.0</version>
    <packaging>jar</packaging>

    <name>${project.groupId}:${project.artifactId}</name>
    <description>Reactome Java API</description>
    <url>https://github.com/reactome/CuratorTool</url>
    <organization>
        <name>Reactome</name>
        <url>https://reactome.org</url>
    </organization>
    <licenses>
        <license>
            <name>APACHE LICENSE, VERSION 2.0</name>
            <url>http://www.apache.org/licenses/LICENSE-2.0</url>
        </license>
    </licenses>

    <developers>
        <developer>
            <name>Reactome Team</name>
            <email>help@reactome.org</email>
            <organization>Reactome</organization>
            <organizationUrl>https://reactome.org</organizationUrl>
        </developer>
    </developers>

    <scm>
        <connection>scm:git:git://github.com/reactome/reactome-base.git</connection>
        <developerConnection>scm:git:ssh://github.com/reactome/reactome-base.git</developerConnection>
        <url>https://github.com/reactome/reactome-base</url>
        <tag>master</tag>
    </scm>

    <properties>
        <!-- dependencies -->
        <javax.jnlp.version>1.2</javax.jnlp.version>
        <jdom.version>1.1.3</jdom.version>
        <mysql.version>5.1.47</mysql.version>

        <!-- build -->
        <jdk.version>1.8</jdk.version>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>

        <!-- maven build and plugins -->
        <maven.compiler.version>3.8.1</maven.compiler.version>
        <maven.gpg.version>3.2.8</maven.gpg.version>
        <maven.javadoc.version>3.11.2</maven.javadoc.version>
        <maven.release.version>3.3.1</maven.release.version>
        <maven.source.version>3.3.1</maven.source.version>
        <maven.surefire.version>3.0.0-M5</maven.surefire.version>
        <maven.tidy.version>1.4.0</maven.tidy.version>
        <maven.sonatype.central.version>0.8.0</maven.sonatype.central.version>
    </properties>

    <dependencies>
        <dependency>
            <groupId>com.github.librepdf</groupId>
            <artifactId>openpdf</artifactId>
            <version>1.4.2</version>
        </dependency>

        <dependency>
            <groupId>commons-lang</groupId>
            <artifactId>commons-lang</artifactId>
            <version>2.5</version>
        </dependency>

        <dependency>
            <groupId>javax.jnlp</groupId>
            <artifactId>jnlp</artifactId>
            <version>${javax.jnlp.version}</version>
            <optional>true</optional>
        </dependency>

        <dependency>
            <groupId>jgraph</groupId>
            <artifactId>jgraph</artifactId>
            <version>5.13.0.0</version>
        </dependency>

        <dependency>
            <groupId>org.apache.xmlgraphics</groupId>
            <artifactId>batik-all</artifactId>
            <version>1.11</version>
        </dependency>

        <dependency>
            <groupId>org.apache.logging.log4j</groupId>
            <artifactId>log4j-api</artifactId>
            <version>2.17.1</version>
        </dependency>

        <dependency>
            <groupId>org.apache.logging.log4j</groupId>
            <artifactId>log4j-core</artifactId>
            <version>2.17.1</version>
        </dependency>

        <dependency>
            <groupId>org.jdom</groupId>
            <artifactId>jdom</artifactId>
            <version>${jdom.version}</version>
        </dependency>

        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>4.12</version>
        </dependency>

        <dependency>
            <groupId>mysql</groupId>
            <artifactId>mysql-connector-java</artifactId>
            <version>${mysql.version}</version>
            <scope>runtime</scope>
        </dependency>
    </dependencies>

    <repositories>
        <!-- required for javax.jnlp jnlp v1.2 -->
        <repository>
            <id>freehep.repository</id>
            <name>Freehep Repository</name>
            <url>https://java.freehep.org/maven2/</url>
        </repository>
    </repositories>

    <build>
        <plugins>
            <!-- sets the Java compiler version targeted by Maven -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>${maven.compiler.version}</version>
                <configuration>
                    <source>${jdk.version}</source>
                    <target>${jdk.version}</target>
                </configuration>
            </plugin>

            <!-- creates jar file containing JavaDocs for the project-->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
                <version>${maven.javadoc.version}</version>
                <executions>
                    <execution>
                        <id>attach-javadocs</id>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                    </execution>
                </executions>
                <configuration>
                    <additionalOptions>-Xdoclint:all -Xdoclint:-missing</additionalOptions>
                    <additionalJOptions>
                        <additionalJOption>-Xdoclint:all</additionalJOption>
                        <additionalJOption>-Xdoclint:-missing</additionalJOption>
                    </additionalJOptions>
                    <doclint>all,-missing</doclint>
                </configuration>
            </plugin>

            <!-- creates jar file containing source (*.java) files for the project-->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-source-plugin</artifactId>
                <version>${maven.source.version}</version>
                <executions>
                    <execution>
                        <id>attach-sources</id>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <!-- signs the artifacts (i.e. POM file, JavaDoc, Source, and Class jars) with GPG program -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-gpg-plugin</artifactId>
                <version>${maven.gpg.version}</version>
                <executions>
                    <execution>
                        <id>sign-artifacts</id>
                        <phase>verify</phase>
                        <goals>
                            <goal>sign</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <!-- executes unit tests -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>${maven.surefire.version}</version>
            </plugin>

            <!-- allows 'mvn release' command to create a new release of the project https://maven.apache.org/maven-release/maven-release-plugin/ -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-release-plugin</artifactId>
                <version>${maven.release.version}</version>
                <configuration>
                    <autoVersionSubmodules>true</autoVersionSubmodules>
                    <useReleaseProfile>false</useReleaseProfile>
                    <releaseProfiles>release</releaseProfiles>
                    <goals>deploy</goals>
                    <tagNameFormat>v@{project.version}</tagNameFormat>
                </configuration>
            </plugin>

            <!-- standardizes layout of pom.xml file -->
            <plugin>
                <groupId>org.codehaus.mojo</groupId>
                <artifactId>tidy-maven-plugin</artifactId>
                <version>${maven.tidy.version}</version>
                <executions>
                    <execution>
                        <id>validate</id>
                        <phase>validate</phase>
                        <goals>
                            <goal>check</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>

            <!-- allows publishing of SNAPSHOTs and releases to Sonatype staging server for Maven Central -->
            <plugin>
                <groupId>org.sonatype.central</groupId>
                <artifactId>central-publishing-maven-plugin</artifactId>
                <version>${maven.sonatype.central.version}</version>
                <extensions>true</extensions>
                <configuration>
                    <publishingServerId>central</publishingServerId>
                </configuration>
            </plugin>
        </plugins>
    </build>
</project>
