org.rcsb.mmtf.serialization

Class MessagePackSerialization

java.lang.Object

org.rcsb.mmtf.serialization.MessagePackSerialization

All Implemented Interfaces:

MmtfStructureSerializationInterface

public class MessagePackSerialization
extends java.lang.Object
implements MmtfStructureSerializationInterface

A message pack implementation of the MmtfStructure serializer / deserializer.

Author:

Anthony Bradley, Antonin Pavelka

Constructor Summary

Constructors

Constructor and Description
MessagePackSerialization() Constructor for the MessagePackSerialization class.

Method Summary

Modifier and Type	Method and Description
MmtfStructure	deserialize(java.io.InputStream inputStream) Deserialize an MmtfStructure from an input stream.
void	serialize(MmtfStructure mmtfStructure, java.io.OutputStream outputStream) Serialize an MmtfStructure to a generic output stream.
static void	setJackson(boolean allowed)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MessagePackSerialization

public MessagePackSerialization()

Constructor for the MessagePackSerialization class. Generates ObjectMapper and sets to include non-null.

Method Detail

setJackson

public static void setJackson(boolean allowed)

deserialize

public MmtfStructure deserialize(java.io.InputStream inputStream)
                          throws java.io.IOException

Description copied from interface: MmtfStructureSerializationInterface

Deserialize an MmtfStructure from an input stream.

Specified by:

deserialize in interface MmtfStructureSerializationInterface

Parameters:

inputStream - the inputstream to deserialize

Returns:

the compressed structure data.

Throws:

java.io.IOException

serialize

public void serialize(MmtfStructure mmtfStructure,
                      java.io.OutputStream outputStream)
               throws java.io.IOException

Description copied from interface: MmtfStructureSerializationInterface

Serialize an MmtfStructure to a generic output stream.

Specified by:

serialize in interface MmtfStructureSerializationInterface

Parameters:

mmtfStructure - the compressed data

outputStream - the output stream to write to

Throws:

java.io.IOException