Package org.rcsb.cif.model.generated

Class StructSiteGen

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.StructSiteGen

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class StructSiteGen
extends BaseCategory

Data items in the STRUCT_SITE_GEN category record details about the generation of portions of the structure that contribute to structurally relevant sites.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
StructSiteGen(String name)
StructSiteGen(String name, int rowCount, Object[] encodedColumns)
StructSiteGen(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	A component of the identifier for participants in the site.
StrColumn	getAuthAtomId()	A component of the identifier for participants in the site.
StrColumn	getAuthCompId()	A component of the identifier for participants in the site.
StrColumn	getAuthSeqId()	A component of the identifier for participants in the site.
StrColumn	getDetails()	A description of special aspects of the symmetry generation of this portion of the structural site.
StrColumn	getId()	The value of _struct_site_gen.id must uniquely identify a record in the STRUCT_SITE_GEN list.
StrColumn	getLabelAltId()	A component of the identifier for participants in the site.
StrColumn	getLabelAsymId()	A component of the identifier for participants in the site.
StrColumn	getLabelAtomId()	A component of the identifier for participants in the site.
StrColumn	getLabelCompId()	A component of the identifier for participants in the site.
IntColumn	getLabelSeqId()	A component of the identifier for participants in the site.
StrColumn	getPdbxAuthInsCode()	PDB insertion code.
IntColumn	getPdbxNumRes()	Number of residues in the site.
StrColumn	getSiteId()	This data item is a pointer to _struct_site.id in the STRUCT_SITE category.
StrColumn	getSymmetry()	Describes the symmetry operation that should be applied to the atom set specified by _struct_site_gen.label* to generate a portion of the site.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

StructSiteGen

public StructSiteGen(String name,
                     Map<String,Column> columns)

StructSiteGen

public StructSiteGen(String name,
                     int rowCount,
                     Object[] encodedColumns)

StructSiteGen

public StructSiteGen(String name)

Method Detail

getDetails

public StrColumn getDetails()

A description of special aspects of the symmetry generation of this portion of the structural site.

Returns:

StrColumn

getId

public StrColumn getId()

The value of _struct_site_gen.id must uniquely identify a record in the STRUCT_SITE_GEN list. Note that this item need not be a number; it can be any unique identifier.

Returns:

StrColumn

getLabelAltId

public StrColumn getLabelAltId()

A component of the identifier for participants in the site. This data item is a pointer to _atom_sites_alt.id in the ATOM_SITES_ALT category.

Returns:

StrColumn

getLabelAsymId

public StrColumn getLabelAsymId()

A component of the identifier for participants in the site. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAtomId

public StrColumn getLabelAtomId()

A component of the identifier for participants in the site. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.

Returns:

StrColumn

getLabelCompId

public StrColumn getLabelCompId()

A component of the identifier for participants in the site. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelSeqId

public IntColumn getLabelSeqId()

A component of the identifier for participants in the site. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

A component of the identifier for participants in the site. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthAtomId

public StrColumn getAuthAtomId()

A component of the identifier for participants in the site. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthCompId

public StrColumn getAuthCompId()

A component of the identifier for participants in the site. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

A component of the identifier for participants in the site. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getSiteId

public StrColumn getSiteId()

This data item is a pointer to _struct_site.id in the STRUCT_SITE category.

Returns:

StrColumn

getSymmetry

public StrColumn getSymmetry()

Describes the symmetry operation that should be applied to the atom set specified by _struct_site_gen.label* to generate a portion of the site.

Returns:

StrColumn

getPdbxAuthInsCode

public StrColumn getPdbxAuthInsCode()

PDB insertion code.

Returns:

StrColumn

getPdbxNumRes

public IntColumn getPdbxNumRes()

Number of residues in the site.

Returns:

IntColumn