Package org.rcsb.cif.model.generated

Class StructSite

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.StructSite

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class StructSite
extends BaseCategory

Data items in the STRUCT_SITE category record details about portions of the structure that contribute to structurally relevant sites (e.g. active sites, substrate-binding subsites, metal-coordination sites).

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
StructSite(String name)
StructSite(String name, int rowCount, Object[] encodedColumns)
StructSite(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDetails()	A description of special aspects of the site.
StrColumn	getId()	The value of _struct_site.id must uniquely identify a record in the STRUCT_SITE list.
StrColumn	getPdbxAuthAsymId()	A component of the identifier for the ligand in the site.
StrColumn	getPdbxAuthCompId()	A component of the identifier for the ligand in the site.
StrColumn	getPdbxAuthInsCode()	PDB insertion code for the ligand in the site.
StrColumn	getPdbxAuthSeqId()	A component of the identifier for the ligand in the site.
StrColumn	getPdbxEvidenceCode()	Source of evidence supporting the assignment of this site.
IntColumn	getPdbxNumResidues()	Number of residues in the site.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

StructSite

public StructSite(String name,
                  Map<String,Column> columns)

StructSite

public StructSite(String name,
                  int rowCount,
                  Object[] encodedColumns)

StructSite

public StructSite(String name)

Method Detail

getDetails

public StrColumn getDetails()

A description of special aspects of the site.

Returns:

StrColumn

getId

public StrColumn getId()

The value of _struct_site.id must uniquely identify a record in the STRUCT_SITE list. Note that this item need not be a number; it can be any unique identifier.

Returns:

StrColumn

getPdbxNumResidues

public IntColumn getPdbxNumResidues()

Number of residues in the site.

Returns:

IntColumn

getPdbxEvidenceCode

public StrColumn getPdbxEvidenceCode()

Source of evidence supporting the assignment of this site.

Returns:

StrColumn

getPdbxAuthAsymId

public StrColumn getPdbxAuthAsymId()

A component of the identifier for the ligand in the site. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getPdbxAuthCompId

public StrColumn getPdbxAuthCompId()

A component of the identifier for the ligand in the site. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getPdbxAuthSeqId

public StrColumn getPdbxAuthSeqId()

A component of the identifier for the ligand in the site. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getPdbxAuthInsCode

public StrColumn getPdbxAuthInsCode()

PDB insertion code for the ligand in the site.

Returns:

StrColumn