Class StructSheetHbond

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class StructSheetHbond
    extends BaseCategory
    Data items in the STRUCT_SHEET_HBOND category record details about the hydrogen bonding between residue ranges in a beta- sheet. It is necessary to treat hydrogen bonding independently of the designation of ranges, because the hydrogen bonding may begin in different places for the interactions of a given strand with the one preceding it and the one following it in the sheet.
    • Constructor Detail

      • StructSheetHbond

        public StructSheetHbond​(String name,
                                int rowCount,
                                Object[] encodedColumns)
      • StructSheetHbond

        public StructSheetHbond​(String name)
    • Method Detail

      • getRange1BegLabelAtomId

        public StrColumn getRange1BegLabelAtomId()
        A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange1BegLabelSeqId

        public IntColumn getRange1BegLabelSeqId()
        A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getRange1EndLabelAtomId

        public StrColumn getRange1EndLabelAtomId()
        A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange1EndLabelSeqId

        public IntColumn getRange1EndLabelSeqId()
        A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getRange2BegLabelAtomId

        public StrColumn getRange2BegLabelAtomId()
        A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange2BegLabelSeqId

        public IntColumn getRange2BegLabelSeqId()
        A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getRange2EndLabelAtomId

        public StrColumn getRange2EndLabelAtomId()
        A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange2EndLabelSeqId

        public IntColumn getRange2EndLabelSeqId()
        A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getRange1BegAuthAtomId

        public StrColumn getRange1BegAuthAtomId()
        A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange1BegAuthSeqId

        public StrColumn getRange1BegAuthSeqId()
        A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange1EndAuthAtomId

        public StrColumn getRange1EndAuthAtomId()
        A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange1EndAuthSeqId

        public StrColumn getRange1EndAuthSeqId()
        A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange2BegAuthAtomId

        public StrColumn getRange2BegAuthAtomId()
        A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange2BegAuthSeqId

        public StrColumn getRange2BegAuthSeqId()
        A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange2EndAuthAtomId

        public StrColumn getRange2EndAuthAtomId()
        A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRange2EndAuthSeqId

        public StrColumn getRange2EndAuthSeqId()
        A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getRangeId1

        public StrColumn getRangeId1()
        This data item is a pointer to _struct_sheet_range.id in the STRUCT_SHEET_RANGE category.
        Returns:
        StrColumn
      • getRangeId2

        public StrColumn getRangeId2()
        This data item is a pointer to _struct_sheet_range.id in the STRUCT_SHEET_RANGE category.
        Returns:
        StrColumn
      • getSheetId

        public StrColumn getSheetId()
        This data item is a pointer to _struct_sheet.id in the STRUCT_SHEET category.
        Returns:
        StrColumn
      • getPdbxRange1BegAuthCompId

        public StrColumn getPdbxRange1BegAuthCompId()
        Pointer to _atom_site.auth_comp_id
        Returns:
        StrColumn
      • getPdbxRange1BegAuthAsymId

        public StrColumn getPdbxRange1BegAuthAsymId()
        Pointer to _atom_site.auth_asym_id.
        Returns:
        StrColumn
      • getPdbxRange1EndAuthCompId

        public StrColumn getPdbxRange1EndAuthCompId()
        Pointer to _atom_site.auth_comp_id.
        Returns:
        StrColumn
      • getPdbxRange1EndAuthAsymId

        public StrColumn getPdbxRange1EndAuthAsymId()
        Pointer to _atom_site.auth_comp_id.
        Returns:
        StrColumn
      • getPdbxRange1BegLabelCompId

        public StrColumn getPdbxRange1BegLabelCompId()
        Pointer to _atom_site.label_comp_id
        Returns:
        StrColumn
      • getPdbxRange1BegLabelAsymId

        public StrColumn getPdbxRange1BegLabelAsymId()
        Pointer to _atom_site.label_asym_id.
        Returns:
        StrColumn
      • getPdbxRange1BegPDBInsCode

        public StrColumn getPdbxRange1BegPDBInsCode()
        Pointer to _atom_site.pdbx_PDB_ins_code.
        Returns:
        StrColumn
      • getPdbxRange1EndLabelCompId

        public StrColumn getPdbxRange1EndLabelCompId()
        Pointer to _atom_site.label_comp_id.
        Returns:
        StrColumn
      • getPdbxRange1EndLabelAsymId

        public StrColumn getPdbxRange1EndLabelAsymId()
        Pointer to _atom_site.label_asym_id.
        Returns:
        StrColumn
      • getPdbxRange1EndPDBInsCode

        public StrColumn getPdbxRange1EndPDBInsCode()
        Pointer to _atom_site.pdbx_PDB_ins_code.
        Returns:
        StrColumn
      • getPdbxRange2BegLabelCompId

        public StrColumn getPdbxRange2BegLabelCompId()
        Pointer to _atom_site.label_comp_id.
        Returns:
        StrColumn
      • getPdbxRange2BegLabelAsymId

        public StrColumn getPdbxRange2BegLabelAsymId()
        Pointer to _atom_site.label_asym_id.
        Returns:
        StrColumn
      • getPdbxRange2BegPDBInsCode

        public StrColumn getPdbxRange2BegPDBInsCode()
        Pointer to _atom_site.pdbx_PDB_ins_code.
        Returns:
        StrColumn
      • getPdbxRange2EndLabelCompId

        public StrColumn getPdbxRange2EndLabelCompId()
        Pointer to _atom_site.label_comp_id.
        Returns:
        StrColumn
      • getPdbxRange2EndLabelAsymId

        public StrColumn getPdbxRange2EndLabelAsymId()
        Pointer to _atom_site.label_asym_id.
        Returns:
        StrColumn
      • getPdbxRange2EndLabelInsCode

        public StrColumn getPdbxRange2EndLabelInsCode()
        Place holder for PDB insertion code.
        Returns:
        StrColumn