Package org.rcsb.cif.model.generated
Class StructSheetHbond
- java.lang.Object
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- org.rcsb.cif.model.BaseCategory
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- org.rcsb.cif.model.generated.StructSheetHbond
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- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class StructSheetHbond extends BaseCategory
Data items in the STRUCT_SHEET_HBOND category record details about the hydrogen bonding between residue ranges in a beta- sheet. It is necessary to treat hydrogen bonding independently of the designation of ranges, because the hydrogen bonding may begin in different places for the interactions of a given strand with the one preceding it and the one following it in the sheet.
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Field Summary
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Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
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Constructor Summary
Constructors Constructor Description StructSheetHbond(String name)StructSheetHbond(String name, int rowCount, Object[] encodedColumns)StructSheetHbond(String name, Map<String,Column> columns)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description StrColumngetPdbxRange1BegAuthAsymId()Pointer to _atom_site.auth_asym_id.StrColumngetPdbxRange1BegAuthCompId()Pointer to _atom_site.auth_comp_idStrColumngetPdbxRange1BegLabelAsymId()Pointer to _atom_site.label_asym_id.StrColumngetPdbxRange1BegLabelCompId()Pointer to _atom_site.label_comp_idStrColumngetPdbxRange1BegPDBInsCode()Pointer to _atom_site.pdbx_PDB_ins_code.StrColumngetPdbxRange1EndAuthAsymId()Pointer to _atom_site.auth_comp_id.StrColumngetPdbxRange1EndAuthCompId()Pointer to _atom_site.auth_comp_id.StrColumngetPdbxRange1EndLabelAsymId()Pointer to _atom_site.label_asym_id.StrColumngetPdbxRange1EndLabelCompId()Pointer to _atom_site.label_comp_id.StrColumngetPdbxRange1EndPDBInsCode()Pointer to _atom_site.pdbx_PDB_ins_code.StrColumngetPdbxRange2BegLabelAsymId()Pointer to _atom_site.label_asym_id.StrColumngetPdbxRange2BegLabelCompId()Pointer to _atom_site.label_comp_id.StrColumngetPdbxRange2BegPDBInsCode()Pointer to _atom_site.pdbx_PDB_ins_code.StrColumngetPdbxRange2EndLabelAsymId()Pointer to _atom_site.label_asym_id.StrColumngetPdbxRange2EndLabelCompId()Pointer to _atom_site.label_comp_id.StrColumngetPdbxRange2EndLabelInsCode()Place holder for PDB insertion code.StrColumngetRange1BegAuthAtomId()A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet.StrColumngetRange1BegAuthSeqId()A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet.StrColumngetRange1BegLabelAtomId()A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet.IntColumngetRange1BegLabelSeqId()A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet.StrColumngetRange1EndAuthAtomId()A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet.StrColumngetRange1EndAuthSeqId()A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet.StrColumngetRange1EndLabelAtomId()A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet.IntColumngetRange1EndLabelSeqId()A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet.StrColumngetRange2BegAuthAtomId()A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet.StrColumngetRange2BegAuthSeqId()A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet.StrColumngetRange2BegLabelAtomId()A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet.IntColumngetRange2BegLabelSeqId()A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet.StrColumngetRange2EndAuthAtomId()A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet.StrColumngetRange2EndAuthSeqId()A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet.StrColumngetRange2EndLabelAtomId()A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet.IntColumngetRange2EndLabelSeqId()A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet.StrColumngetRangeId1()This data item is a pointer to _struct_sheet_range.id in the STRUCT_SHEET_RANGE category.StrColumngetRangeId2()This data item is a pointer to _struct_sheet_range.id in the STRUCT_SHEET_RANGE category.StrColumngetSheetId()This data item is a pointer to _struct_sheet.id in the STRUCT_SHEET category.-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
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Method Detail
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getRange1BegLabelAtomId
public StrColumn getRange1BegLabelAtomId()
A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange1BegLabelSeqId
public IntColumn getRange1BegLabelSeqId()
A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getRange1EndLabelAtomId
public StrColumn getRange1EndLabelAtomId()
A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange1EndLabelSeqId
public IntColumn getRange1EndLabelSeqId()
A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getRange2BegLabelAtomId
public StrColumn getRange2BegLabelAtomId()
A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange2BegLabelSeqId
public IntColumn getRange2BegLabelSeqId()
A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getRange2EndLabelAtomId
public StrColumn getRange2EndLabelAtomId()
A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange2EndLabelSeqId
public IntColumn getRange2EndLabelSeqId()
A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getRange1BegAuthAtomId
public StrColumn getRange1BegAuthAtomId()
A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange1BegAuthSeqId
public StrColumn getRange1BegAuthSeqId()
A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange1EndAuthAtomId
public StrColumn getRange1EndAuthAtomId()
A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange1EndAuthSeqId
public StrColumn getRange1EndAuthSeqId()
A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange2BegAuthAtomId
public StrColumn getRange2BegAuthAtomId()
A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange2BegAuthSeqId
public StrColumn getRange2BegAuthSeqId()
A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange2EndAuthAtomId
public StrColumn getRange2EndAuthAtomId()
A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRange2EndAuthSeqId
public StrColumn getRange2EndAuthSeqId()
A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getRangeId1
public StrColumn getRangeId1()
This data item is a pointer to _struct_sheet_range.id in the STRUCT_SHEET_RANGE category.- Returns:
- StrColumn
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getRangeId2
public StrColumn getRangeId2()
This data item is a pointer to _struct_sheet_range.id in the STRUCT_SHEET_RANGE category.- Returns:
- StrColumn
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getSheetId
public StrColumn getSheetId()
This data item is a pointer to _struct_sheet.id in the STRUCT_SHEET category.- Returns:
- StrColumn
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getPdbxRange1BegAuthCompId
public StrColumn getPdbxRange1BegAuthCompId()
Pointer to _atom_site.auth_comp_id- Returns:
- StrColumn
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getPdbxRange1BegAuthAsymId
public StrColumn getPdbxRange1BegAuthAsymId()
Pointer to _atom_site.auth_asym_id.- Returns:
- StrColumn
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getPdbxRange1EndAuthCompId
public StrColumn getPdbxRange1EndAuthCompId()
Pointer to _atom_site.auth_comp_id.- Returns:
- StrColumn
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getPdbxRange1EndAuthAsymId
public StrColumn getPdbxRange1EndAuthAsymId()
Pointer to _atom_site.auth_comp_id.- Returns:
- StrColumn
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getPdbxRange1BegLabelCompId
public StrColumn getPdbxRange1BegLabelCompId()
Pointer to _atom_site.label_comp_id- Returns:
- StrColumn
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getPdbxRange1BegLabelAsymId
public StrColumn getPdbxRange1BegLabelAsymId()
Pointer to _atom_site.label_asym_id.- Returns:
- StrColumn
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getPdbxRange1BegPDBInsCode
public StrColumn getPdbxRange1BegPDBInsCode()
Pointer to _atom_site.pdbx_PDB_ins_code.- Returns:
- StrColumn
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getPdbxRange1EndLabelCompId
public StrColumn getPdbxRange1EndLabelCompId()
Pointer to _atom_site.label_comp_id.- Returns:
- StrColumn
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getPdbxRange1EndLabelAsymId
public StrColumn getPdbxRange1EndLabelAsymId()
Pointer to _atom_site.label_asym_id.- Returns:
- StrColumn
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getPdbxRange1EndPDBInsCode
public StrColumn getPdbxRange1EndPDBInsCode()
Pointer to _atom_site.pdbx_PDB_ins_code.- Returns:
- StrColumn
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getPdbxRange2BegLabelCompId
public StrColumn getPdbxRange2BegLabelCompId()
Pointer to _atom_site.label_comp_id.- Returns:
- StrColumn
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getPdbxRange2BegLabelAsymId
public StrColumn getPdbxRange2BegLabelAsymId()
Pointer to _atom_site.label_asym_id.- Returns:
- StrColumn
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getPdbxRange2BegPDBInsCode
public StrColumn getPdbxRange2BegPDBInsCode()
Pointer to _atom_site.pdbx_PDB_ins_code.- Returns:
- StrColumn
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getPdbxRange2EndLabelCompId
public StrColumn getPdbxRange2EndLabelCompId()
Pointer to _atom_site.label_comp_id.- Returns:
- StrColumn
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getPdbxRange2EndLabelAsymId
public StrColumn getPdbxRange2EndLabelAsymId()
Pointer to _atom_site.label_asym_id.- Returns:
- StrColumn
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getPdbxRange2EndLabelInsCode
public StrColumn getPdbxRange2EndLabelInsCode()
Place holder for PDB insertion code.- Returns:
- StrColumn
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