Package org.rcsb.cif.model.generated

Class StructRefSeqDif

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.StructRefSeqDif

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class StructRefSeqDif
extends BaseCategory

Data items in the STRUCT_REF_SEQ_DIF category provide a mechanism for indicating and annotating point differences between the sequence of the entity or biological unit described in the data block and the sequence of the referenced database entry.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
StructRefSeqDif(String name)
StructRefSeqDif(String name, int rowCount, Object[] encodedColumns)
StructRefSeqDif(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAlignId()	This data item is a pointer to _struct_ref_seq.align_id in the STRUCT_REF_SEQ category.
StrColumn	getDbMonId()	The monomer type found at this position in the referenced database entry.
StrColumn	getDetails()	A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the referenced database entry.
StrColumn	getMonId()	The monomer type found at this position in the sequence of the entity or biological unit described in this data block.
StrColumn	getPdbxAuthSeqNum()	Insertion code in PDB sequence
IntColumn	getPdbxOrdinal()	A synthetic integer primary key for this category.
StrColumn	getPdbxPdbIdCode()	The PDB ID code.
StrColumn	getPdbxPdbInsCode()	Insertion code in PDB sequence
StrColumn	getPdbxPdbStrandId()	PDB strand/chain id.
StrColumn	getPdbxSeqDbAccessionCode()	Sequence database accession number.
StrColumn	getPdbxSeqDbName()	Sequence database name.
StrColumn	getPdbxSeqDbSeqNum()	Sequence database sequence number.
IntColumn	getSeqNum()	This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

StructRefSeqDif

public StructRefSeqDif(String name,
                       Map<String,Column> columns)

StructRefSeqDif

public StructRefSeqDif(String name,
                       int rowCount,
                       Object[] encodedColumns)

StructRefSeqDif

public StructRefSeqDif(String name)

Method Detail

getAlignId

public StrColumn getAlignId()

This data item is a pointer to _struct_ref_seq.align_id in the STRUCT_REF_SEQ category.

Returns:

StrColumn

getDbMonId

public StrColumn getDbMonId()

The monomer type found at this position in the referenced database entry. This data item is a pointer to _chem_comp.id in the CHEM_COMP category.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the referenced database entry.

Returns:

StrColumn

getMonId

public StrColumn getMonId()

The monomer type found at this position in the sequence of the entity or biological unit described in this data block. This data item is a pointer to _chem_comp.id in the CHEM_COMP category.

Returns:

StrColumn

getSeqNum

public IntColumn getSeqNum()

This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.

Returns:

IntColumn

getPdbxPdbIdCode

public StrColumn getPdbxPdbIdCode()

The PDB ID code.

Returns:

StrColumn

getPdbxPdbStrandId

public StrColumn getPdbxPdbStrandId()

PDB strand/chain id.

Returns:

StrColumn

getPdbxPdbInsCode

public StrColumn getPdbxPdbInsCode()

Insertion code in PDB sequence

Returns:

StrColumn

getPdbxAuthSeqNum

public StrColumn getPdbxAuthSeqNum()

Insertion code in PDB sequence

Returns:

StrColumn

getPdbxSeqDbName

public StrColumn getPdbxSeqDbName()

Sequence database name.

Returns:

StrColumn

getPdbxSeqDbAccessionCode

public StrColumn getPdbxSeqDbAccessionCode()

Sequence database accession number.

Returns:

StrColumn

getPdbxSeqDbSeqNum

public StrColumn getPdbxSeqDbSeqNum()

Sequence database sequence number.

Returns:

StrColumn

getPdbxOrdinal

public IntColumn getPdbxOrdinal()

A synthetic integer primary key for this category.

Returns:

IntColumn