Package org.rcsb.cif.model.generated

Class StructMonProtCis

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.StructMonProtCis

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class StructMonProtCis
extends BaseCategory

Data items in the STRUCT_MON_PROT_CIS category identify monomers that have been found to have the peptide bond in the cis conformation. The criterion used to select residues to be designated as containing cis peptide bonds is given in _struct_mon_details.prot_cis.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
StructMonProtCis(String name)
StructMonProtCis(String name, int rowCount, Object[] encodedColumns)
StructMonProtCis(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	A component of the identifier for the monomer.
StrColumn	getAuthCompId()	A component of the identifier for the monomer.
StrColumn	getAuthSeqId()	A component of the identifier for the monomer.
StrColumn	getLabelAltId()	A component of the identifier for the monomer.
StrColumn	getLabelAsymId()	A component of the identifier for the monomer.
StrColumn	getLabelCompId()	A component of the identifier for the monomer.
IntColumn	getLabelSeqId()	A component of the identifier for the monomer.
StrColumn	getPdbxAuthAsymId2()	Pointer to _atom_site.auth_asym_id.
StrColumn	getPdbxAuthCompId2()	Pointer to _atom_site.auth_comp_id.
StrColumn	getPdbxAuthInsCode()	PDB Insertion code
StrColumn	getPdbxAuthInsCode2()	PDB Insertion code
StrColumn	getPdbxAuthSeqId2()	Pointer to _atom_site.auth_seq_id
StrColumn	getPdbxId()	ordinal index
StrColumn	getPdbxLabelAsymId2()	Pointer to _atom_site.label_asym_id.
StrColumn	getPdbxLabelCompId2()	Pointer to _atom_site.label_comp_id.
IntColumn	getPdbxLabelSeqId2()	Pointer to _atom_site.label_seq_id
StrColumn	getPdbxOmegaAngle()	omega torsion angle
StrColumn	getPdbxPDBInsCode()	Pointer to _atom_site.pdbx_PDB_ins_code
StrColumn	getPdbxPDBInsCode2()	Pointer to _atom_site.pdbx_PDB_ins_code
IntColumn	getPdbxPDBModelNum()	Pointer to _atom_site.pdbx_PDB_model_num

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

StructMonProtCis

public StructMonProtCis(String name,
                        Map<String,Column> columns)

StructMonProtCis

public StructMonProtCis(String name,
                        int rowCount,
                        Object[] encodedColumns)

StructMonProtCis

public StructMonProtCis(String name)

Method Detail

getLabelAltId

public StrColumn getLabelAltId()

A component of the identifier for the monomer. This data item is a pointer to _atom_sites_alt.id in the ATOM_SITES_ALT category.

Returns:

StrColumn

getLabelAsymId

public StrColumn getLabelAsymId()

A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelCompId

public StrColumn getLabelCompId()

A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelSeqId

public IntColumn getLabelSeqId()

A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthCompId

public StrColumn getAuthCompId()

A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getPdbxAuthAsymId2

public StrColumn getPdbxAuthAsymId2()

Pointer to _atom_site.auth_asym_id.

Returns:

StrColumn

getPdbxAuthCompId2

public StrColumn getPdbxAuthCompId2()

Pointer to _atom_site.auth_comp_id.

Returns:

StrColumn

getPdbxAuthSeqId2

public StrColumn getPdbxAuthSeqId2()

Pointer to _atom_site.auth_seq_id

Returns:

StrColumn

getPdbxLabelAsymId2

public StrColumn getPdbxLabelAsymId2()

Pointer to _atom_site.label_asym_id.

Returns:

StrColumn

getPdbxLabelCompId2

public StrColumn getPdbxLabelCompId2()

Pointer to _atom_site.label_comp_id.

Returns:

StrColumn

getPdbxLabelSeqId2

public IntColumn getPdbxLabelSeqId2()

Pointer to _atom_site.label_seq_id

Returns:

IntColumn

getPdbxPDBInsCode

public StrColumn getPdbxPDBInsCode()

Pointer to _atom_site.pdbx_PDB_ins_code

Returns:

StrColumn

getPdbxPDBInsCode2

public StrColumn getPdbxPDBInsCode2()

Pointer to _atom_site.pdbx_PDB_ins_code

Returns:

StrColumn

getPdbxPDBModelNum

public IntColumn getPdbxPDBModelNum()

Pointer to _atom_site.pdbx_PDB_model_num

Returns:

IntColumn

getPdbxOmegaAngle

public StrColumn getPdbxOmegaAngle()

omega torsion angle

Returns:

StrColumn

getPdbxId

public StrColumn getPdbxId()

ordinal index

Returns:

StrColumn

getPdbxAuthInsCode

public StrColumn getPdbxAuthInsCode()

PDB Insertion code

Returns:

StrColumn

getPdbxAuthInsCode2

public StrColumn getPdbxAuthInsCode2()

PDB Insertion code

Returns:

StrColumn