java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.StructMonProt

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class StructMonProt
extends BaseCategory
```
Data items in the STRUCT_MON_PROT category record details about structural properties of a protein when analyzed at the monomer level. Analogous data items for nucleic acids are given in the STRUCT_MON_NUCL category. For items where the value of the property depends on the method employed to calculate it, details of the method of calculation are given using data items in the STRUCT_MON_DETAILS category.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`StructMonProt(String name)`
`StructMonProt(String name, int rowCount, Object[] encodedColumns)`
`StructMonProt(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StrColumn`	`getAuthAsymId()`	A component of the identifier for the monomer.
`StrColumn`	`getAuthCompId()`	A component of the identifier for the monomer.
`StrColumn`	`getAuthSeqId()`	A component of the identifier for the monomer.
`FloatColumn`	`getChi1()`	The value in degrees of the side-chain torsion angle chi1, for those residues containing such an angle.
`FloatColumn`	`getChi2()`	The value in degrees of the side-chain torsion angle chi2, for those residues containing such an angle.
`FloatColumn`	`getChi3()`	The value in degrees of the side-chain torsion angle chi3, for those residues containing such an angle.
`FloatColumn`	`getChi4()`	The value in degrees of the side-chain torsion angle chi4, for those residues containing such an angle.
`FloatColumn`	`getChi5()`	The value in degrees of the side-chain torsion angle chi5, for those residues containing such an angle.
`FloatColumn`	`getDetails()`	A description of special aspects of the residue, its conformation, behaviour in refinement, or any other aspect that requires annotation.
`StrColumn`	`getLabelAltId()`	A component of the identifier for the monomer.
`StrColumn`	`getLabelAsymId()`	A component of the identifier for the monomer.
`StrColumn`	`getLabelCompId()`	A component of the identifier for the monomer.
`IntColumn`	`getLabelSeqId()`	A component of the identifier for the monomer.
`FloatColumn`	`getMeanBAll()`	The mean value of the isotropic displacement parameter for all atoms in the monomer.
`FloatColumn`	`getMeanBMain()`	The mean value of the isotropic displacement parameter for atoms in the main chain of the monomer.
`FloatColumn`	`getMeanBSide()`	The mean value of the isotropic displacement parameter for atoms in the side chain of the monomer.
`FloatColumn`	`getOmega()`	The value in degrees of the main-chain torsion angle omega.
`FloatColumn`	`getPhi()`	The value in degrees of the main-chain torsion angle phi.
`FloatColumn`	`getPsi()`	The value in degrees of the main-chain torsion angle psi.
`FloatColumn`	`getRSCCAll()`	The real-space (linear) correlation coefficient RSCC, as described by Jones et al.
`FloatColumn`	`getRSCCMain()`	The real-space (linear) correlation coefficient RSCC, as described by Jones et al.
`FloatColumn`	`getRSCCSide()`	The real-space (linear) correlation coefficient RSCC, as described by Jones et al.
`FloatColumn`	`getRSRAll()`	The real-space residual RSR, as described by Branden & Jones (1990), evaluated over all atoms in the monomer.
`FloatColumn`	`getRSRMain()`	The real-space residual RSR, as described by Branden & Jones (1990), evaluated over all atoms in the main chain of the monomer.
`FloatColumn`	`getRSRSide()`	The real-space residual RSR, as described by Branden & Jones (1990), evaluated over all atoms in the side chain of the monomer.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - StructMonProt
```
public StructMonProt(String name,
                     Map<String,Column> columns)
```
  - StructMonProt
```
public StructMonProt(String name,
                     int rowCount,
                     Object[] encodedColumns)
```
  - StructMonProt
```
public StructMonProt(String name)
```
- Method Detail
  - getChi1
```
public FloatColumn getChi1()
```
    The value in degrees of the side-chain torsion angle chi1, for those residues containing such an angle.
    
    Returns:
    
    FloatColumn
  - getChi2
```
public FloatColumn getChi2()
```
    The value in degrees of the side-chain torsion angle chi2, for those residues containing such an angle.
    
    Returns:
    
    FloatColumn
  - getChi3
```
public FloatColumn getChi3()
```
    The value in degrees of the side-chain torsion angle chi3, for those residues containing such an angle.
    
    Returns:
    
    FloatColumn
  - getChi4
```
public FloatColumn getChi4()
```
    The value in degrees of the side-chain torsion angle chi4, for those residues containing such an angle.
    
    Returns:
    
    FloatColumn
  - getChi5
```
public FloatColumn getChi5()
```
    The value in degrees of the side-chain torsion angle chi5, for those residues containing such an angle.
    
    Returns:
    
    FloatColumn
  - getDetails
```
public FloatColumn getDetails()
```
    A description of special aspects of the residue, its conformation, behaviour in refinement, or any other aspect that requires annotation.
    
    Returns:
    
    FloatColumn
  - getLabelAltId
```
public StrColumn getLabelAltId()
```
    A component of the identifier for the monomer. This data item is a pointer to _atom_sites_alt.id in the ATOM_SITES_ALT category.
    
    Returns:
    
    StrColumn
  - getLabelAsymId
```
public StrColumn getLabelAsymId()
```
    A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelCompId
```
public StrColumn getLabelCompId()
```
    A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelSeqId
```
public IntColumn getLabelSeqId()
```
    A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAuthAsymId
```
public StrColumn getAuthAsymId()
```
    A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthCompId
```
public StrColumn getAuthCompId()
```
    A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthSeqId
```
public StrColumn getAuthSeqId()
```
    A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getRSCCAll
```
public FloatColumn getRSCCAll()
```
    The real-space (linear) correlation coefficient RSCC, as described by Jones et al. (1991), evaluated over all atoms in the monomer. sum|p~obs~ - <p~obs~>| * sum|p~calc~ - <p~calc~>| RSCC = ------------------------------------------------- [ sum|p~obs~ - <p~obs~> |^2^ * sum|p~calc~ - <p~calc~>|^2^ ]^1/2^ p~obs~ = the density in an 'experimental' map p~calc~ = the density in a 'calculated' map sum is taken over the specified grid points Details of how these maps were calculated should be given in _struct_mon_details.RSCC. < > indicates an average and the sums are taken over all map grid points near the relevant atoms. The radius for including grid points in the calculation should also be given in _struct_mon_details.RSCC. Ref: Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
    
    Returns:
    
    FloatColumn
  - getRSCCMain
```
public FloatColumn getRSCCMain()
```
    The real-space (linear) correlation coefficient RSCC, as described by Jones et al. (1991), evaluated over all atoms in the main chain of the monomer. sum|p~obs~ - <p~obs~>| * sum|p~calc~ - <p~calc~>| RSCC = ------------------------------------------------- [ sum|p~obs~ - <p~obs~> |^2^ * sum|p~calc~ - <p~calc~>|^2^ ]^1/2^ p~obs~ = the density in an 'experimental' map p~calc~ = the density in a 'calculated' map sum is taken over the specified grid points Details of how these maps were calculated should be given in _struct_mon_details.RSCC. < > indicates an average and the sums are taken over all map grid points near the relevant atoms. The radius for including grid points in the calculation should also be given in _struct_mon_details.RSCC. Ref: Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
    
    Returns:
    
    FloatColumn
  - getRSCCSide
```
public FloatColumn getRSCCSide()
```
    The real-space (linear) correlation coefficient RSCC, as described by Jones et al. (1991), evaluated over all atoms in the side chain of the monomer. sum|p~obs~ - <p~obs~>| * sum|p~calc~ - <p~calc~>| RSCC = ------------------------------------------------- [ sum|p~obs~ - <p~obs~> |^2^ * sum|p~calc~ - <p~calc~>|^2^ ]^1/2^ p~obs~ = the density in an 'experimental' map p~calc~ = the density in a 'calculated' map sum is taken over the specified grid points Details of how these maps were calculated should be given in _struct_mon_details.RSCC. < > indicates an average and the sums are taken over all map grid points near the relevant atoms. The radius for including grid points in the calculation should also be given in _struct_mon_details.RSCC. Ref: Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M. (1991). Acta Cryst. A47, 110-119.
    
    Returns:
    
    FloatColumn
  - getRSRAll
```
public FloatColumn getRSRAll()
```
    The real-space residual RSR, as described by Branden & Jones (1990), evaluated over all atoms in the monomer. sum|p~obs~ - p~calc~| RSR = --------------------- sum|p~obs~ + p~calc~| p~obs~ = the density in an 'experimental' map p~calc~ = the density in a 'calculated' map sum is taken over the specified grid points Details of how these maps were calculated should be given in _struct_mon_details.RSR. The sums are taken over all map grid points near the relevant atoms. The radius for including grid points in the calculation should also be given in _struct_mon_details.RSR. Ref: Branden, C.-I. & Jones, T. A. (1990). Nature (London), 343, 687-689.
    
    Returns:
    
    FloatColumn
  - getRSRMain
```
public FloatColumn getRSRMain()
```
    The real-space residual RSR, as described by Branden & Jones (1990), evaluated over all atoms in the main chain of the monomer. sum|p~obs~ - p~calc~| RSR = --------------------- sum|p~obs~ + p~calc~| p~obs~ = the density in an 'experimental' map p~calc~ = the density in a 'calculated' map sum is taken over the specified grid points Details of how these maps were calculated should be given in _struct_mon_details.RSR. The sums are taken over all map grid points near the relevant atoms. The radius for including grid points in the calculation should also be given in _struct_mon_details.RSR. Ref: Branden, C.-I. & Jones, T. A. (1990). Nature (London), 343, 687-689.
    
    Returns:
    
    FloatColumn
  - getRSRSide
```
public FloatColumn getRSRSide()
```
    The real-space residual RSR, as described by Branden & Jones (1990), evaluated over all atoms in the side chain of the monomer. sum|p~obs~ - p~calc~| RSR = --------------------- sum|p~obs~ + p~calc~| p~obs~ = the density in an 'experimental' map p~calc~ = the density in a 'calculated' map sum is taken over the specified grid points Details of how these maps were calculated should be given in _struct_mon_details.RSR. The sums are taken over all map grid points near the relevant atoms. The radius for including grid points in the calculation should also be given in _struct_mon_details.RSR. Ref: Branden, C.-I. & Jones, T. A. (1990). Nature (London), 343, 687-689.
    
    Returns:
    
    FloatColumn
  - getMeanBAll
```
public FloatColumn getMeanBAll()
```
    The mean value of the isotropic displacement parameter for all atoms in the monomer.
    
    Returns:
    
    FloatColumn
  - getMeanBMain
```
public FloatColumn getMeanBMain()
```
    The mean value of the isotropic displacement parameter for atoms in the main chain of the monomer.
    
    Returns:
    
    FloatColumn
  - getMeanBSide
```
public FloatColumn getMeanBSide()
```
    The mean value of the isotropic displacement parameter for atoms in the side chain of the monomer.
    
    Returns:
    
    FloatColumn
  - getOmega
```
public FloatColumn getOmega()
```
    The value in degrees of the main-chain torsion angle omega.
    
    Returns:
    
    FloatColumn
  - getPhi
```
public FloatColumn getPhi()
```
    The value in degrees of the main-chain torsion angle phi.
    
    Returns:
    
    FloatColumn
  - getPsi
```
public FloatColumn getPsi()
```
    The value in degrees of the main-chain torsion angle psi.
    
    Returns:
    
    FloatColumn

Class StructMonProt

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

StructMonProt

StructMonProt

StructMonProt

Method Detail

getChi1

getChi2

getChi3

getChi4

getChi5

getDetails

getLabelAltId

getLabelAsymId

getLabelCompId

getLabelSeqId

getAuthAsymId

getAuthCompId

getAuthSeqId

getRSCCAll

getRSCCMain

getRSCCSide

getRSRAll

getRSRMain

getRSRSide

getMeanBAll

getMeanBMain

getMeanBSide

getOmega

getPhi

getPsi