Package org.rcsb.cif.model.generated
Class StructConf
- java.lang.Object
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- org.rcsb.cif.model.BaseCategory
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- org.rcsb.cif.model.generated.StructConf
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- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class StructConf extends BaseCategory
Data items in the STRUCT_CONF category record details about the backbone conformation of a segment of polymer. Data items in the STRUCT_CONF_TYPE category define the criteria used to identify the backbone conformations.
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Field Summary
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Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
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Constructor Summary
Constructors Constructor Description StructConf(String name)StructConf(String name, int rowCount, Object[] encodedColumns)StructConf(String name, Map<String,Column> columns)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description StrColumngetBegAuthAsymId()A component of the identifier for the residue at which the conformation segment begins.StrColumngetBegAuthCompId()A component of the identifier for the residue at which the conformation segment begins.IntColumngetBegAuthSeqId()A component of the identifier for the residue at which the conformation segment begins.StrColumngetBegLabelAsymId()A component of the identifier for the residue at which the conformation segment begins.StrColumngetBegLabelCompId()A component of the identifier for the residue at which the conformation segment begins.IntColumngetBegLabelSeqId()A component of the identifier for the residue at which the conformation segment begins.StrColumngetConfTypeId()This data item is a pointer to _struct_conf_type.id in the STRUCT_CONF_TYPE category.StrColumngetDetails()A description of special aspects of the conformation assignment.StrColumngetEndAuthAsymId()A component of the identifier for the residue at which the conformation segment ends.StrColumngetEndAuthCompId()A component of the identifier for the residue at which the conformation segment ends.IntColumngetEndAuthSeqId()A component of the identifier for the residue at which the conformation segment ends.StrColumngetEndLabelAsymId()A component of the identifier for the residue at which the conformation segment ends.StrColumngetEndLabelCompId()A component of the identifier for the residue at which the conformation segment ends.IntColumngetEndLabelSeqId()A component of the identifier for the residue at which the conformation segment ends.StrColumngetId()The value of _struct_conf.id must uniquely identify a record in the STRUCT_CONF list.StrColumngetPdbxBegPDBInsCode()A component of the identifier for the residue at which the conformation segment starts.StrColumngetPdbxEndPDBInsCode()A component of the identifier for the residue at which the conformation segment ends.StrColumngetPdbxPDBHelixClass()This item is a place holder for the helix class used in the PDB HELIX record.StrColumngetPdbxPDBHelixId()A placeholder for the helix identifier of the PDB HELIX record.IntColumngetPdbxPDBHelixLength()A placeholder for the lengths of the helix of the PDB HELIX record.-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
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Method Detail
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getBegLabelAsymId
public StrColumn getBegLabelAsymId()
A component of the identifier for the residue at which the conformation segment begins. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getBegLabelCompId
public StrColumn getBegLabelCompId()
A component of the identifier for the residue at which the conformation segment begins. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getBegLabelSeqId
public IntColumn getBegLabelSeqId()
A component of the identifier for the residue at which the conformation segment begins. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getBegAuthAsymId
public StrColumn getBegAuthAsymId()
A component of the identifier for the residue at which the conformation segment begins. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getBegAuthCompId
public StrColumn getBegAuthCompId()
A component of the identifier for the residue at which the conformation segment begins. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getBegAuthSeqId
public IntColumn getBegAuthSeqId()
A component of the identifier for the residue at which the conformation segment begins. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getConfTypeId
public StrColumn getConfTypeId()
This data item is a pointer to _struct_conf_type.id in the STRUCT_CONF_TYPE category.- Returns:
- StrColumn
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getDetails
public StrColumn getDetails()
A description of special aspects of the conformation assignment.- Returns:
- StrColumn
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getEndLabelAsymId
public StrColumn getEndLabelAsymId()
A component of the identifier for the residue at which the conformation segment ends. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getEndLabelCompId
public StrColumn getEndLabelCompId()
A component of the identifier for the residue at which the conformation segment ends. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getEndLabelSeqId
public IntColumn getEndLabelSeqId()
A component of the identifier for the residue at which the conformation segment ends. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getEndAuthAsymId
public StrColumn getEndAuthAsymId()
A component of the identifier for the residue at which the conformation segment ends. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getEndAuthCompId
public StrColumn getEndAuthCompId()
A component of the identifier for the residue at which the conformation segment ends. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getEndAuthSeqId
public IntColumn getEndAuthSeqId()
A component of the identifier for the residue at which the conformation segment ends. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getId
public StrColumn getId()
The value of _struct_conf.id must uniquely identify a record in the STRUCT_CONF list. Note that this item need not be a number; it can be any unique identifier.- Returns:
- StrColumn
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getPdbxBegPDBInsCode
public StrColumn getPdbxBegPDBInsCode()
A component of the identifier for the residue at which the conformation segment starts.- Returns:
- StrColumn
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getPdbxEndPDBInsCode
public StrColumn getPdbxEndPDBInsCode()
A component of the identifier for the residue at which the conformation segment ends.- Returns:
- StrColumn
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getPdbxPDBHelixClass
public StrColumn getPdbxPDBHelixClass()
This item is a place holder for the helix class used in the PDB HELIX record.- Returns:
- StrColumn
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getPdbxPDBHelixLength
public IntColumn getPdbxPDBHelixLength()
A placeholder for the lengths of the helix of the PDB HELIX record.- Returns:
- IntColumn
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getPdbxPDBHelixId
public StrColumn getPdbxPDBHelixId()
A placeholder for the helix identifier of the PDB HELIX record.- Returns:
- StrColumn
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