Class StructBiolView

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class StructBiolView
    extends BaseCategory
    Data items in the STRUCT_BIOL_VIEW category record details about how to draw and annotate an informative view of the biological structure.
    • Constructor Detail

      • StructBiolView

        public StructBiolView​(String name,
                              int rowCount,
                              Object[] encodedColumns)
      • StructBiolView

        public StructBiolView​(String name)
    • Method Detail

      • getBiolId

        public StrColumn getBiolId()
        This data item is a pointer to _struct_biol.id in the STRUCT_BIOL category.
        Returns:
        StrColumn
      • getDetails

        public StrColumn getDetails()
        A description of special aspects of this view of the biological structure. This data item can be used as a figure legend.
        Returns:
        StrColumn
      • getId

        public StrColumn getId()
        The value of _struct_biol_view.id must uniquely identify a record in the STRUCT_BIOL_VIEW list. Note that this item need not be a number; it can be any unique identifier.
        Returns:
        StrColumn
      • getRotMatrix11

        public FloatColumn getRotMatrix11()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getRotMatrix12

        public FloatColumn getRotMatrix12()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getRotMatrix13

        public FloatColumn getRotMatrix13()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getRotMatrix21

        public FloatColumn getRotMatrix21()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getRotMatrix22

        public FloatColumn getRotMatrix22()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getRotMatrix23

        public FloatColumn getRotMatrix23()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getRotMatrix31

        public FloatColumn getRotMatrix31()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getRotMatrix32

        public FloatColumn getRotMatrix32()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getRotMatrix33

        public FloatColumn getRotMatrix33()
        The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
        Returns:
        FloatColumn
      • getPdbxVector1

        public FloatColumn getPdbxVector1()
        translation vector
        Returns:
        FloatColumn
      • getPdbxVector2

        public FloatColumn getPdbxVector2()
        translation vector
        Returns:
        FloatColumn
      • getPdbxVector3

        public FloatColumn getPdbxVector3()
        translation vector
        Returns:
        FloatColumn