Package org.rcsb.cif.model.generated

Class StructBiolGen

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.StructBiolGen

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class StructBiolGen
extends BaseCategory

Data items in the STRUCT_BIOL_GEN category record details about the generation of each biological unit. The STRUCT_BIOL_GEN data items provide the specifications of the components that constitute that biological unit, which may include symmetry elements.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
StructBiolGen(String name)
StructBiolGen(String name, int rowCount, Object[] encodedColumns)
StructBiolGen(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAsymId()	This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
StrColumn	getBiolId()	This data item is a pointer to _struct_biol.id in the STRUCT_BIOL category.
StrColumn	getDetails()	A description of special aspects of the symmetry generation of this portion of the biological structure.
StrColumn	getPdbxAfterBeginResidueNo()	The new residue number after generation of portions of the biomolecule.
StrColumn	getPdbxAfterEndResidueNo()	The new residue number after generation of portions of the biomolecule.
StrColumn	getPdbxBeforeBeginResidueNo()	The number of the first residue to which the symmetry operations have to be applied to generate a portion of the biomolecule.
StrColumn	getPdbxBeforeEndResidueNo()	The number of the last residue to which the symmetry operations have to be applied to generate a portion of the biomolecule.
FloatColumn	getPdbxColorBlue()	Gives rgb color code of this strand.
FloatColumn	getPdbxColorGreen()	Gives rgb color code of this strand.
FloatColumn	getPdbxColorRed()	Gives rgb color code of this strand.
StrColumn	getPdbxFullSymmetryOperation()	This item expresses category _struct_biol_gen.symmetry on an X, Y and Z basis.
StrColumn	getPdbxNewAsymId()	This category gives the NDB strand ids for the complete biomolecule after it is generated.
StrColumn	getPdbxNewPdbAsymId()	This data item is the PDB strand ID of the strand which will be generated.
IntColumn	getPdbxPDBOrder()	An ordering index used to reproduce the presentation of chain order in the original PDB format data files.
StrColumn	getSymmetry()	Describes the symmetry operation that should be applied to the atom set specified by _struct_biol_gen.asym_id to generate a portion of the biological structure.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

StructBiolGen

public StructBiolGen(String name,
                     Map<String,Column> columns)

StructBiolGen

public StructBiolGen(String name,
                     int rowCount,
                     Object[] encodedColumns)

StructBiolGen

public StructBiolGen(String name)

Method Detail

getAsymId

public StrColumn getAsymId()

This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.

Returns:

StrColumn

getBiolId

public StrColumn getBiolId()

This data item is a pointer to _struct_biol.id in the STRUCT_BIOL category.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

A description of special aspects of the symmetry generation of this portion of the biological structure.

Returns:

StrColumn

getSymmetry

public StrColumn getSymmetry()

Describes the symmetry operation that should be applied to the atom set specified by _struct_biol_gen.asym_id to generate a portion of the biological structure.

Returns:

StrColumn

getPdbxFullSymmetryOperation

public StrColumn getPdbxFullSymmetryOperation()

This item expresses category _struct_biol_gen.symmetry on an X, Y and Z basis.

Returns:

StrColumn

getPdbxPDBOrder

public IntColumn getPdbxPDBOrder()

An ordering index used to reproduce the presentation of chain order in the original PDB format data files.

Returns:

IntColumn

getPdbxNewAsymId

public StrColumn getPdbxNewAsymId()

This category gives the NDB strand ids for the complete biomolecule after it is generated.

Returns:

StrColumn

getPdbxNewPdbAsymId

public StrColumn getPdbxNewPdbAsymId()

This data item is the PDB strand ID of the strand which will be generated.

Returns:

StrColumn

getPdbxColorRed

public FloatColumn getPdbxColorRed()

Gives rgb color code of this strand.

Returns:

FloatColumn

getPdbxColorGreen

public FloatColumn getPdbxColorGreen()

Gives rgb color code of this strand.

Returns:

FloatColumn

getPdbxColorBlue

public FloatColumn getPdbxColorBlue()

Gives rgb color code of this strand.

Returns:

FloatColumn

getPdbxAfterBeginResidueNo

public StrColumn getPdbxAfterBeginResidueNo()

The new residue number after generation of portions of the biomolecule.

Returns:

StrColumn

getPdbxAfterEndResidueNo

public StrColumn getPdbxAfterEndResidueNo()

The new residue number after generation of portions of the biomolecule.

Returns:

StrColumn

getPdbxBeforeBeginResidueNo

public StrColumn getPdbxBeforeBeginResidueNo()

The number of the first residue to which the symmetry operations have to be applied to generate a portion of the biomolecule.

Returns:

StrColumn

getPdbxBeforeEndResidueNo

public StrColumn getPdbxBeforeEndResidueNo()

The number of the last residue to which the symmetry operations have to be applied to generate a portion of the biomolecule.

Returns:

StrColumn