Package org.rcsb.cif.model.generated

Class StructBiol

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.StructBiol

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class StructBiol
extends BaseCategory

Data items in the STRUCT_BIOL category record details about the structural elements that form each structure of biological significance. A given crystal structure may contain many different biological structures. A given structural component in the asymmetric unit may be part of more than one biological unit. A given biological structure may involve crystallographic symmetry. For instance, in a structure of a lysozyme-FAB structure, the light- and heavy-chain components of the FAB could be one biological unit, while the two chains of the FAB and the lysozyme could constitute a second biological unit.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
StructBiol(String name)
StructBiol(String name, int rowCount, Object[] encodedColumns)
StructBiol(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDetails()	A description of special aspects of the biological unit.
StrColumn	getId()	The value of _struct_biol.id must uniquely identify a record in the STRUCT_BIOL list.
StrColumn	getPdbxAggregationState()	A description of the structural aggregation in this assembly.
StrColumn	getPdbxAssemblyMethod()	The method or experiment used to determine this assembly.
FloatColumn	getPdbxFormulaWeight()	Estimated formula mass in daltons of the biological assembly.
StrColumn	getPdbxFormulaWeightMethod()	Method used to determine _struct_biol.pdbx_formula_weight.
StrColumn	getPdbxParentBiolId()	An identifier for the parent biological assembly if this biological unit is part of a complex assembly.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

StructBiol

public StructBiol(String name,
                  Map<String,Column> columns)

StructBiol

public StructBiol(String name,
                  int rowCount,
                  Object[] encodedColumns)

StructBiol

public StructBiol(String name)

Method Detail

getDetails

public StrColumn getDetails()

A description of special aspects of the biological unit.

Returns:

StrColumn

getId

public StrColumn getId()

The value of _struct_biol.id must uniquely identify a record in the STRUCT_BIOL list. Note that this item need not be a number; it can be any unique identifier.

Returns:

StrColumn

getPdbxParentBiolId

public StrColumn getPdbxParentBiolId()

An identifier for the parent biological assembly if this biological unit is part of a complex assembly.

Returns:

StrColumn

getPdbxFormulaWeight

public FloatColumn getPdbxFormulaWeight()

Estimated formula mass in daltons of the biological assembly.

Returns:

FloatColumn

getPdbxFormulaWeightMethod

public StrColumn getPdbxFormulaWeightMethod()

Method used to determine _struct_biol.pdbx_formula_weight.

Returns:

StrColumn

getPdbxAggregationState

public StrColumn getPdbxAggregationState()

A description of the structural aggregation in this assembly.

Returns:

StrColumn

getPdbxAssemblyMethod

public StrColumn getPdbxAssemblyMethod()

The method or experiment used to determine this assembly.

Returns:

StrColumn