Package org.rcsb.cif.model.generated

Class StructAsym

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.StructAsym

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class StructAsym
extends BaseCategory

Data items in the STRUCT_ASYM category record details about the structural elements in the asymmetric unit.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
StructAsym(String name)
StructAsym(String name, int rowCount, Object[] encodedColumns)
StructAsym(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDetails()	A description of special aspects of this portion of the contents of the asymmetric unit.
StrColumn	getEntityId()	This data item is a pointer to _entity.id in the ENTITY category.
StrColumn	getId()	The value of _struct_asym.id must uniquely identify a record in the STRUCT_ASYM list.
StrColumn	getPdbxAltId()	This data item is a pointer to _atom_site.ndb_alias_strand_id the ATOM_SITE category.
StrColumn	getPdbxBlankPDBChainidFlag()	A flag indicating that this entity was originally labeled with a blank PDB chain id.
StrColumn	getPdbxFractionPerAsymUnit()	This data item indicates wheather the structural elements exists only as part of its whole molecule in the asymmetric unit.
IntColumn	getPdbxMissingNumBeginOfChainInSeqres()	This data item provides the information of how many residues which do appear in the SEQRES record are missing at the beginning of the strand.
IntColumn	getPdbxMissingNumBeginOfChainNotInSeqres()	This data item provides the information of how many residues which do not appear in the SEQRES record are missing at the beginning of the strand.
IntColumn	getPdbxMissingNumEndOfChainNotInSeqres()	This data item provides the information of how many residues which do not appear in the SEQRES record are missing at the end of the strand.
StrColumn	getPdbxModified()	This data item indicates whether the structural elements are modified.
IntColumn	getPdbxOrder()	This data item gives the order of the structural elements in the ATOM_SITE category.
StrColumn	getPdbxPDBId()	This data item is a pointer to _atom_site.pdbx_PDB_strand_id the ATOM_SITE category.
StrColumn	getPdbxType()	This data item describes the general type of the structural elements in the ATOM_SITE category.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

StructAsym

public StructAsym(String name,
                  Map<String,Column> columns)

StructAsym

public StructAsym(String name,
                  int rowCount,
                  Object[] encodedColumns)

StructAsym

public StructAsym(String name)

Method Detail

getDetails

public StrColumn getDetails()

A description of special aspects of this portion of the contents of the asymmetric unit.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getId

public StrColumn getId()

The value of _struct_asym.id must uniquely identify a record in the STRUCT_ASYM list. Note that this item need not be a number; it can be any unique identifier.

Returns:

StrColumn

getPdbxModified

public StrColumn getPdbxModified()

This data item indicates whether the structural elements are modified.

Returns:

StrColumn

getPdbxBlankPDBChainidFlag

public StrColumn getPdbxBlankPDBChainidFlag()

A flag indicating that this entity was originally labeled with a blank PDB chain id.

Returns:

StrColumn

getPdbxPDBId

public StrColumn getPdbxPDBId()

This data item is a pointer to _atom_site.pdbx_PDB_strand_id the ATOM_SITE category.

Returns:

StrColumn

getPdbxAltId

public StrColumn getPdbxAltId()

This data item is a pointer to _atom_site.ndb_alias_strand_id the ATOM_SITE category.

Returns:

StrColumn

getPdbxType

public StrColumn getPdbxType()

This data item describes the general type of the structural elements in the ATOM_SITE category.

Returns:

StrColumn

getPdbxOrder

public IntColumn getPdbxOrder()

This data item gives the order of the structural elements in the ATOM_SITE category.

Returns:

IntColumn

getPdbxFractionPerAsymUnit

public StrColumn getPdbxFractionPerAsymUnit()

This data item indicates wheather the structural elements exists only as part of its whole molecule in the asymmetric unit.

Returns:

StrColumn

getPdbxMissingNumBeginOfChainNotInSeqres

public IntColumn getPdbxMissingNumBeginOfChainNotInSeqres()

This data item provides the information of how many residues which do not appear in the SEQRES record are missing at the beginning of the strand.

Returns:

IntColumn

getPdbxMissingNumEndOfChainNotInSeqres

public IntColumn getPdbxMissingNumEndOfChainNotInSeqres()

This data item provides the information of how many residues which do not appear in the SEQRES record are missing at the end of the strand.

Returns:

IntColumn

getPdbxMissingNumBeginOfChainInSeqres

public IntColumn getPdbxMissingNumBeginOfChainInSeqres()

This data item provides the information of how many residues which do appear in the SEQRES record are missing at the beginning of the strand.

Returns:

IntColumn