Package org.rcsb.cif.model.generated

Class RefineBIso

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.RefineBIso

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class RefineBIso
extends BaseCategory

Data items in the REFINE_B_ISO category record details about the treatment of isotropic B factors (displacement parameters) during refinement.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
RefineBIso(String name)
RefineBIso(String name, int rowCount, Object[] encodedColumns)
RefineBIso(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getClazz()	A class of atoms treated similarly for isotropic B-factor (displacement-parameter) refinement.
StrColumn	getDetails()	A description of special aspects of the isotropic B-factor (displacement-parameter) refinement for the class of atoms described in _refine_B_iso.class.
StrColumn	getPdbxRefineId()	This data item uniquely identifies a refinement within an entry.
StrColumn	getPdbxResidueName()	Residue name of those residues treated similarly for isotropic B (temperature) factor refinement.
StrColumn	getPdbxResidueNum()	Resiude number of residues treated similarly for isotropic B (temperature) factor refinement.
StrColumn	getPdbxStrand()	Asym chain id of residues treated similarly for isotropic B (temperature) factor refinement.
StrColumn	getTreatment()	The treatment of isotropic B-factor (displacement-parameter) refinement for a class of atoms defined in _refine_B_iso.class.
FloatColumn	getValue()	The value of the isotropic B factor (displacement parameter) assigned to a class of atoms defined in _refine_B_iso.class.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

RefineBIso

public RefineBIso(String name,
                  Map<String,Column> columns)

RefineBIso

public RefineBIso(String name,
                  int rowCount,
                  Object[] encodedColumns)

RefineBIso

public RefineBIso(String name)

Method Detail

getPdbxRefineId

public StrColumn getPdbxRefineId()

This data item uniquely identifies a refinement within an entry. _refine_B_iso.pdbx_refine_id can be used to distinguish the results of joint refinements.

Returns:

StrColumn

getClazz

public StrColumn getClazz()

A class of atoms treated similarly for isotropic B-factor (displacement-parameter) refinement.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

A description of special aspects of the isotropic B-factor (displacement-parameter) refinement for the class of atoms described in _refine_B_iso.class.

Returns:

StrColumn

getTreatment

public StrColumn getTreatment()

The treatment of isotropic B-factor (displacement-parameter) refinement for a class of atoms defined in _refine_B_iso.class.

Returns:

StrColumn

getValue

public FloatColumn getValue()

The value of the isotropic B factor (displacement parameter) assigned to a class of atoms defined in _refine_B_iso.class. Meaningful only for atoms with fixed isotropic B factors.

Returns:

FloatColumn

getPdbxResidueName

public StrColumn getPdbxResidueName()

Residue name of those residues treated similarly for isotropic B (temperature) factor refinement.

Returns:

StrColumn

getPdbxStrand

public StrColumn getPdbxStrand()

Asym chain id of residues treated similarly for isotropic B (temperature) factor refinement.

Returns:

StrColumn

getPdbxResidueNum

public StrColumn getPdbxResidueNum()

Resiude number of residues treated similarly for isotropic B (temperature) factor refinement.

Returns:

StrColumn