Package org.rcsb.cif.model.generated

Class PhasingMADExpt

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PhasingMADExpt

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PhasingMADExpt
extends BaseCategory

Data items in the PHASING_MAD_EXPT category record details about a MAD phasing experiment, such as the number of experiments that were clustered together to produce a set of phases or the statistics for those phases.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PhasingMADExpt(String name)
PhasingMADExpt(String name, int rowCount, Object[] encodedColumns)
PhasingMADExpt(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
FloatColumn	getDeltaDeltaPhi()	The difference between two independent determinations of _phasing_MAD_expt.delta_phi.
FloatColumn	getDeltaPhi()	The phase difference between F~t~(h), the structure factor due to normal scattering from all atoms, and F~a~(h), the structure factor due to normal scattering from only the anomalous scatterers.
FloatColumn	getDeltaPhiSigma()	The standard uncertainty (estimated standard deviation) of _phasing_MAD_expt.delta_phi.
StrColumn	getId()	The value of _phasing_MAD_expt.id must uniquely identify each record in the PHASING_MAD_EXPT list.
FloatColumn	getMeanFom()	The mean figure of merit.
IntColumn	getNumberClust()	The number of clusters of data sets in this phasing experiment.
FloatColumn	getRNormalAll()	Definition...
FloatColumn	getRNormalAnomScat()	Definition...

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PhasingMADExpt

public PhasingMADExpt(String name,
                      Map<String,Column> columns)

PhasingMADExpt

public PhasingMADExpt(String name,
                      int rowCount,
                      Object[] encodedColumns)

PhasingMADExpt

public PhasingMADExpt(String name)

Method Detail

getDeltaDeltaPhi

public FloatColumn getDeltaDeltaPhi()

The difference between two independent determinations of _phasing_MAD_expt.delta_phi.

Returns:

FloatColumn

getDeltaPhi

public FloatColumn getDeltaPhi()

The phase difference between F~t~(h), the structure factor due to normal scattering from all atoms, and F~a~(h), the structure factor due to normal scattering from only the anomalous scatterers.

Returns:

FloatColumn

getDeltaPhiSigma

public FloatColumn getDeltaPhiSigma()

The standard uncertainty (estimated standard deviation) of _phasing_MAD_expt.delta_phi.

Returns:

FloatColumn

getId

public StrColumn getId()

The value of _phasing_MAD_expt.id must uniquely identify each record in the PHASING_MAD_EXPT list.

Returns:

StrColumn

getMeanFom

public FloatColumn getMeanFom()

The mean figure of merit.

Returns:

FloatColumn

getNumberClust

public IntColumn getNumberClust()

The number of clusters of data sets in this phasing experiment.

Returns:

IntColumn

getRNormalAll

public FloatColumn getRNormalAll()

Definition...

Returns:

FloatColumn

getRNormalAnomScat

public FloatColumn getRNormalAnomScat()

Definition...

Returns:

FloatColumn