java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.PdbxVirtualBond

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxVirtualBond
extends BaseCategory
```
Data items in the PDBX_VIRTUAL_BOND category record details about virtual bonds, as calculated from the contents of the ATOM, CELL, and SYMMETRY data.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`PdbxVirtualBond(String name)`
`PdbxVirtualBond(String name, int rowCount, Object[] encodedColumns)`
`PdbxVirtualBond(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StrColumn`	`getAtomSiteAuthAsymId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteAuthAsymId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteAuthAtomId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteAuthAtomId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteAuthCompId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteAuthCompId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteAuthSeqId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`IntColumn`	`getAtomSiteAuthSeqId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteId1()`	The identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteId2()`	The identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteLabelAltId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteLabelAltId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteLabelAsymId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteLabelAsymId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteLabelAtomId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteLabelAtomId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteLabelCompId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getAtomSiteLabelCompId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`IntColumn`	`getAtomSiteLabelSeqId1()`	An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`IntColumn`	`getAtomSiteLabelSeqId2()`	An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`FloatColumn`	`getDist()`	The intramolecular bond distance in angstroms.
`FloatColumn`	`getDistEsd()`	The estimated standard deviation of _pdbx_virtual_bond.dist.
`IntColumn`	`getModelId()`	The model number for the given bond
`StrColumn`	`getSiteSymmetry1()`	The symmetry code of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
`StrColumn`	`getSiteSymmetry2()`	The symmetry code of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - PdbxVirtualBond
```
public PdbxVirtualBond(String name,
                       Map<String,Column> columns)
```
  - PdbxVirtualBond
```
public PdbxVirtualBond(String name,
                       int rowCount,
                       Object[] encodedColumns)
```
  - PdbxVirtualBond
```
public PdbxVirtualBond(String name)
```
- Method Detail
  - getModelId
```
public IntColumn getModelId()
```
    The model number for the given bond
    
    Returns:
    
    IntColumn
  - getAtomSiteId1
```
public StrColumn getAtomSiteId1()
```
    The identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAltId1
```
public StrColumn getAtomSiteLabelAltId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAtomId1
```
public StrColumn getAtomSiteLabelAtomId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelCompId1
```
public StrColumn getAtomSiteLabelCompId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelSeqId1
```
public IntColumn getAtomSiteLabelSeqId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAtomSiteLabelAsymId1
```
public StrColumn getAtomSiteLabelAsymId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteId2
```
public StrColumn getAtomSiteId2()
```
    The identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAltId2
```
public StrColumn getAtomSiteLabelAltId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelAtomId2
```
public StrColumn getAtomSiteLabelAtomId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelCompId2
```
public StrColumn getAtomSiteLabelCompId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteLabelSeqId2
```
public IntColumn getAtomSiteLabelSeqId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAtomSiteLabelAsymId2
```
public StrColumn getAtomSiteLabelAsymId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAtomId1
```
public StrColumn getAtomSiteAuthAtomId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAsymId1
```
public StrColumn getAtomSiteAuthAsymId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthCompId1
```
public StrColumn getAtomSiteAuthCompId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthSeqId1
```
public StrColumn getAtomSiteAuthSeqId1()
```
    An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAtomId2
```
public StrColumn getAtomSiteAuthAtomId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthAsymId2
```
public StrColumn getAtomSiteAuthAsymId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthCompId2
```
public StrColumn getAtomSiteAuthCompId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAtomSiteAuthSeqId2
```
public IntColumn getAtomSiteAuthSeqId2()
```
    An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getDist
```
public FloatColumn getDist()
```
    The intramolecular bond distance in angstroms.
    
    Returns:
    
    FloatColumn
  - getDistEsd
```
public FloatColumn getDistEsd()
```
    The estimated standard deviation of _pdbx_virtual_bond.dist.
    
    Returns:
    
    FloatColumn
  - getSiteSymmetry1
```
public StrColumn getSiteSymmetry1()
```
    The symmetry code of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
    
    Returns:
    
    StrColumn
  - getSiteSymmetry2
```
public StrColumn getSiteSymmetry2()
```
    The symmetry code of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
    
    Returns:
    
    StrColumn

Class PdbxVirtualBond

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

PdbxVirtualBond

PdbxVirtualBond

PdbxVirtualBond

Method Detail

getModelId

getAtomSiteId1

getAtomSiteLabelAltId1

getAtomSiteLabelAtomId1

getAtomSiteLabelCompId1

getAtomSiteLabelSeqId1

getAtomSiteLabelAsymId1

getAtomSiteId2

getAtomSiteLabelAltId2

getAtomSiteLabelAtomId2

getAtomSiteLabelCompId2

getAtomSiteLabelSeqId2

getAtomSiteLabelAsymId2

getAtomSiteAuthAtomId1

getAtomSiteAuthAsymId1

getAtomSiteAuthCompId1

getAtomSiteAuthSeqId1

getAtomSiteAuthAtomId2

getAtomSiteAuthAsymId2

getAtomSiteAuthCompId2

getAtomSiteAuthSeqId2

getDist

getDistEsd

getSiteSymmetry1

getSiteSymmetry2