Class PdbxVirtualAngle

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class PdbxVirtualAngle
    extends BaseCategory
    Data items in the PDBX_VIRTUAL_ANGLE category record details about the molecular virtual angles, as calculated from the contents of the ATOM, CELL, and SYMMETRY data.
    • Constructor Detail

      • PdbxVirtualAngle

        public PdbxVirtualAngle​(String name,
                                int rowCount,
                                Object[] encodedColumns)
      • PdbxVirtualAngle

        public PdbxVirtualAngle​(String name)
    • Method Detail

      • getModelId

        public IntColumn getModelId()
        The model number for the given angle
        Returns:
        IntColumn
      • getAtomSiteId1

        public StrColumn getAtomSiteId1()
        The identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelAltId1

        public StrColumn getAtomSiteLabelAltId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelAtomId1

        public StrColumn getAtomSiteLabelAtomId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelCompId1

        public StrColumn getAtomSiteLabelCompId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelSeqId1

        public IntColumn getAtomSiteLabelSeqId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getAtomSiteLabelAsymId1

        public StrColumn getAtomSiteLabelAsymId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteId2

        public StrColumn getAtomSiteId2()
        The identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. The second atom is taken to be the apex of the angle. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelAltId2

        public StrColumn getAtomSiteLabelAltId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelAtomId2

        public StrColumn getAtomSiteLabelAtomId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelCompId2

        public StrColumn getAtomSiteLabelCompId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelSeqId2

        public IntColumn getAtomSiteLabelSeqId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getAtomSiteLabelAsymId2

        public StrColumn getAtomSiteLabelAsymId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteId3

        public StrColumn getAtomSiteId3()
        The identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelAltId3

        public StrColumn getAtomSiteLabelAltId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelAtomId3

        public StrColumn getAtomSiteLabelAtomId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelCompId3

        public StrColumn getAtomSiteLabelCompId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteLabelSeqId3

        public IntColumn getAtomSiteLabelSeqId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getAtomSiteLabelAsymId3

        public StrColumn getAtomSiteLabelAsymId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthAsymId1

        public StrColumn getAtomSiteAuthAsymId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthAtomId1

        public StrColumn getAtomSiteAuthAtomId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthCompId1

        public StrColumn getAtomSiteAuthCompId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthSeqId1

        public StrColumn getAtomSiteAuthSeqId1()
        An optional identifier of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthAtomId2

        public StrColumn getAtomSiteAuthAtomId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthAsymId2

        public StrColumn getAtomSiteAuthAsymId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthCompId2

        public StrColumn getAtomSiteAuthCompId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthSeqId2

        public StrColumn getAtomSiteAuthSeqId2()
        An optional identifier of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthAtomId3

        public StrColumn getAtomSiteAuthAtomId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthAsymId3

        public StrColumn getAtomSiteAuthAsymId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthCompId3

        public StrColumn getAtomSiteAuthCompId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAtomSiteAuthSeqId3

        public StrColumn getAtomSiteAuthSeqId3()
        An optional identifier of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.value. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getSiteSymmetry1

        public StrColumn getSiteSymmetry1()
        The symmetry code of the first of the three atom sites that define the angle specified by _pdbx_virtual_angle.
        Returns:
        StrColumn
      • getSiteSymmetry2

        public StrColumn getSiteSymmetry2()
        The symmetry code of the second of the three atom sites that define the angle specified by _pdbx_virtual_angle.
        Returns:
        StrColumn
      • getSiteSymmetry3

        public StrColumn getSiteSymmetry3()
        The symmetry code of the third of the three atom sites that define the angle specified by _pdbx_virtual_angle.
        Returns:
        StrColumn
      • getValue

        public FloatColumn getValue()
        Angle in degrees bounded by the three sites _pdbx_virtual_angle.atom_site_id_1, _pdbx_virtual_angle.atom_site_id_2 and _pdbx_virtual_angle.atom_site_id_3.
        Returns:
        FloatColumn
      • getValueEsd

        public FloatColumn getValueEsd()
        The estimated standard deviation of _pdbx_virtual_angle.value.
        Returns:
        FloatColumn