Package org.rcsb.cif.model.generated

Class PdbxValidateTorsion

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxValidateTorsion

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxValidateTorsion
extends BaseCategory

Data items in the PDBX_VALIDATE_TORSION category list the residues with torsion angles outside the expected ramachandran regions

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxValidateTorsion(String name)
PdbxValidateTorsion(String name, int rowCount, Object[] encodedColumns)
PdbxValidateTorsion(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	Part of the identifier of the residue This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
StrColumn	getAuthCompId()	Part of the identifier of the residue This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
StrColumn	getAuthSeqId()	Part of the identifier of the residue This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
IntColumn	getId()	The value of _pdbx_validate_torsion.id must uniquely identify each item in the PDBX_VALIDATE_TORSION list.
StrColumn	getLabelAltId()	Optional identifier of the residue This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
StrColumn	getPDBInsCode()	Optional identifier of the residue This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
IntColumn	getPDBModelNum()	The model number for the given residue This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
FloatColumn	getPhi()	The Phi value that for the residue that lies outside normal limits (in combination with the Psi value) with regards to the rammachandran plot
FloatColumn	getPsi()	The Psi value that for the residue that lies outside normal limits (in combination with the Phi value) with regards to the rammachandran plot

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxValidateTorsion

public PdbxValidateTorsion(String name,
                           Map<String,Column> columns)

PdbxValidateTorsion

public PdbxValidateTorsion(String name,
                           int rowCount,
                           Object[] encodedColumns)

PdbxValidateTorsion

public PdbxValidateTorsion(String name)

Method Detail

getId

public IntColumn getId()

The value of _pdbx_validate_torsion.id must uniquely identify each item in the PDBX_VALIDATE_TORSION list. This is an integer serial number.

Returns:

IntColumn

getPDBModelNum

public IntColumn getPDBModelNum()

The model number for the given residue This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

Part of the identifier of the residue This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthCompId

public StrColumn getAuthCompId()

Part of the identifier of the residue This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

Part of the identifier of the residue This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getPDBInsCode

public StrColumn getPDBInsCode()

Optional identifier of the residue This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.

Returns:

StrColumn

getLabelAltId

public StrColumn getLabelAltId()

Optional identifier of the residue This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.

Returns:

StrColumn

getPhi

public FloatColumn getPhi()

The Phi value that for the residue that lies outside normal limits (in combination with the Psi value) with regards to the rammachandran plot

Returns:

FloatColumn

getPsi

public FloatColumn getPsi()

The Psi value that for the residue that lies outside normal limits (in combination with the Phi value) with regards to the rammachandran plot

Returns:

FloatColumn