Class PdbxValidateRmsdAngle

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class PdbxValidateRmsdAngle
    extends BaseCategory
    Data items in the PDBX_VALIDATE_RMSD_ANGLE category list the the covalent bond angles found in an entry that have values which deviate from expected values by more than 6*rmsd for the particular entry from the expected standard value
    • Constructor Detail

      • PdbxValidateRmsdAngle

        public PdbxValidateRmsdAngle​(String name,
                                     int rowCount,
                                     Object[] encodedColumns)
      • PdbxValidateRmsdAngle

        public PdbxValidateRmsdAngle​(String name)
    • Method Detail

      • getId

        public IntColumn getId()
        The value of _pdbx_validate_rmsd_angle.id must uniquely identify each item in the PDBX_VALIDATE_RMSD_ANGLE list. This is an integer serial number.
        Returns:
        IntColumn
      • getPDBModelNum

        public IntColumn getPDBModelNum()
        The model number for the given angle
        Returns:
        IntColumn
      • getAuthAsymId1

        public StrColumn getAuthAsymId1()
        Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAtomId1

        public StrColumn getAuthAtomId1()
        Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthCompId1

        public StrColumn getAuthCompId1()
        Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthSeqId1

        public StrColumn getAuthSeqId1()
        Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAtomId2

        public StrColumn getAuthAtomId2()
        Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAsymId2

        public StrColumn getAuthAsymId2()
        identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthCompId2

        public StrColumn getAuthCompId2()
        Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthSeqId2

        public StrColumn getAuthSeqId2()
        Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAtomId3

        public StrColumn getAuthAtomId3()
        Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAsymId3

        public StrColumn getAuthAsymId3()
        Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthCompId3

        public StrColumn getAuthCompId3()
        Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthSeqId3

        public StrColumn getAuthSeqId3()
        Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getPDBInsCode1

        public StrColumn getPDBInsCode1()
        Optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn
      • getPDBInsCode2

        public StrColumn getPDBInsCode2()
        Optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn
      • getPDBInsCode3

        public StrColumn getPDBInsCode3()
        Optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAltId1

        public StrColumn getLabelAltId1()
        An optional identifier of the first of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt.id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAltId2

        public StrColumn getLabelAltId2()
        An optional identifier of the second of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAltId3

        public StrColumn getLabelAltId3()
        An optional identifier of the third of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAngleDeviation

        public FloatColumn getAngleDeviation()
        Value of the deviation (in degrees) from 6*REBI for the angle bounded by the three sites from the expected dictionary value.
        Returns:
        FloatColumn
      • getAngleValue

        public FloatColumn getAngleValue()
        The value of the bond angle
        Returns:
        FloatColumn
      • getAngleTargetValue

        public FloatColumn getAngleTargetValue()
        The target value of the bond angle
        Returns:
        FloatColumn
      • getAngleStandardDeviation

        public FloatColumn getAngleStandardDeviation()
        The uncertainty in the target value of the bond angle expressed as a standard deviation.
        Returns:
        FloatColumn
      • getLinkerFlag

        public StrColumn getLinkerFlag()
        A flag to indicate if the angle is between two residues
        Returns:
        StrColumn