Package org.rcsb.cif.model.generated
Class PdbxValidateRmsdAngle
- java.lang.Object
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- org.rcsb.cif.model.BaseCategory
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- org.rcsb.cif.model.generated.PdbxValidateRmsdAngle
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- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class PdbxValidateRmsdAngle extends BaseCategory
Data items in the PDBX_VALIDATE_RMSD_ANGLE category list the the covalent bond angles found in an entry that have values which deviate from expected values by more than 6*rmsd for the particular entry from the expected standard value
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Field Summary
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Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
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Constructor Summary
Constructors Constructor Description PdbxValidateRmsdAngle(String name)PdbxValidateRmsdAngle(String name, int rowCount, Object[] encodedColumns)PdbxValidateRmsdAngle(String name, Map<String,Column> columns)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description FloatColumngetAngleDeviation()Value of the deviation (in degrees) from 6*REBI for the angle bounded by the three sites from the expected dictionary value.FloatColumngetAngleStandardDeviation()The uncertainty in the target value of the bond angle expressed as a standard deviation.FloatColumngetAngleTargetValue()The target value of the bond angleFloatColumngetAngleValue()The value of the bond angleStrColumngetAuthAsymId1()Part of the identifier of the first of the three atom sites that define the angle.StrColumngetAuthAsymId2()identifier of the second of the three atom sites that define the angle.StrColumngetAuthAsymId3()Part of the identifier of the third of the three atom sites that define the angle.StrColumngetAuthAtomId1()Part of the identifier of the first of the three atom sites that define the angle.StrColumngetAuthAtomId2()Part of the identifier of the second of the three atom sites that define the angle.StrColumngetAuthAtomId3()Part of the identifier of the third of the three atom sites that define the angle.StrColumngetAuthCompId1()Part of the identifier of the first of the three atom sites that define the angle.StrColumngetAuthCompId2()Part of the identifier of the second of the three atom sites that define the angle.StrColumngetAuthCompId3()Part of the identifier of the third of the three atom sites that define the angle.StrColumngetAuthSeqId1()Part of the identifier of the first of the three atom sites that define the angle.StrColumngetAuthSeqId2()Part of the identifier of the second of the three atom sites that define the angle.StrColumngetAuthSeqId3()Part of the identifier of the third of the three atom sites that define the angle.IntColumngetId()The value of _pdbx_validate_rmsd_angle.id must uniquely identify each item in the PDBX_VALIDATE_RMSD_ANGLE list.StrColumngetLabelAltId1()An optional identifier of the first of the three atoms that define the covalent angle.StrColumngetLabelAltId2()An optional identifier of the second of the three atoms that define the covalent angle.StrColumngetLabelAltId3()An optional identifier of the third of the three atoms that define the covalent angle.StrColumngetLinkerFlag()A flag to indicate if the angle is between two residuesStrColumngetPDBInsCode1()Optional identifier of the first of the three atom sites that define the angle.StrColumngetPDBInsCode2()Optional identifier of the second of the three atom sites that define the angle.StrColumngetPDBInsCode3()Optional identifier of the third of the three atom sites that define the angle.IntColumngetPDBModelNum()The model number for the given angle-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
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Method Detail
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getId
public IntColumn getId()
The value of _pdbx_validate_rmsd_angle.id must uniquely identify each item in the PDBX_VALIDATE_RMSD_ANGLE list. This is an integer serial number.- Returns:
- IntColumn
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getPDBModelNum
public IntColumn getPDBModelNum()
The model number for the given angle- Returns:
- IntColumn
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getAuthAsymId1
public StrColumn getAuthAsymId1()
Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAtomId1
public StrColumn getAuthAtomId1()
Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthCompId1
public StrColumn getAuthCompId1()
Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthSeqId1
public StrColumn getAuthSeqId1()
Part of the identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAtomId2
public StrColumn getAuthAtomId2()
Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAsymId2
public StrColumn getAuthAsymId2()
identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthCompId2
public StrColumn getAuthCompId2()
Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthSeqId2
public StrColumn getAuthSeqId2()
Part of the identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAtomId3
public StrColumn getAuthAtomId3()
Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAsymId3
public StrColumn getAuthAsymId3()
Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthCompId3
public StrColumn getAuthCompId3()
Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthSeqId3
public StrColumn getAuthSeqId3()
Part of the identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getPDBInsCode1
public StrColumn getPDBInsCode1()
Optional identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.- Returns:
- StrColumn
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getPDBInsCode2
public StrColumn getPDBInsCode2()
Optional identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.- Returns:
- StrColumn
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getPDBInsCode3
public StrColumn getPDBInsCode3()
Optional identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelAltId1
public StrColumn getLabelAltId1()
An optional identifier of the first of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt.id in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelAltId2
public StrColumn getLabelAltId2()
An optional identifier of the second of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelAltId3
public StrColumn getLabelAltId3()
An optional identifier of the third of the three atoms that define the covalent angle. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAngleDeviation
public FloatColumn getAngleDeviation()
Value of the deviation (in degrees) from 6*REBI for the angle bounded by the three sites from the expected dictionary value.- Returns:
- FloatColumn
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getAngleValue
public FloatColumn getAngleValue()
The value of the bond angle- Returns:
- FloatColumn
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getAngleTargetValue
public FloatColumn getAngleTargetValue()
The target value of the bond angle- Returns:
- FloatColumn
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getAngleStandardDeviation
public FloatColumn getAngleStandardDeviation()
The uncertainty in the target value of the bond angle expressed as a standard deviation.- Returns:
- FloatColumn
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getLinkerFlag
public StrColumn getLinkerFlag()
A flag to indicate if the angle is between two residues- Returns:
- StrColumn
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