Package org.rcsb.cif.model.generated

Class PdbxValidatePlanesAtom

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxValidatePlanesAtom

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxValidatePlanesAtom
extends BaseCategory

Data items in the PDBX_VALIDATE_PLANES_ATOM category list the residues that contain unexpected deviations from planes centers.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxValidatePlanesAtom(String name)
PdbxValidatePlanesAtom(String name, int rowCount, Object[] encodedColumns)
PdbxValidatePlanesAtom(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
FloatColumn	getAtomDeviation()	The deviation from the plane per atom
StrColumn	getAuthAsymId()	Part of the identifier of an atom site that defines the plane This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
StrColumn	getAuthAtomId()	Part of the identifier of an atom site that defines the plane This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
StrColumn	getAuthCompId()	Part of the identifier of an atom site that defines the plane This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
StrColumn	getAuthSeqId()	Part of the identifier of an atom site that defines the plane This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
IntColumn	getId()	The value of _pdbx_validate_planes_atom.id must uniquely identify each item in the PDBX_VALIDATE_PLANES_ATOM list.
StrColumn	getPDBInsCode()	Optional identifier of an atom site that defines the plane
IntColumn	getPDBModelNum()	The model number for an atom site defining the plane This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
IntColumn	getPlaneId()	A pointer to _pdbx_validate_planes.id This is an integer serial number.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxValidatePlanesAtom

public PdbxValidatePlanesAtom(String name,
                              Map<String,Column> columns)

PdbxValidatePlanesAtom

public PdbxValidatePlanesAtom(String name,
                              int rowCount,
                              Object[] encodedColumns)

PdbxValidatePlanesAtom

public PdbxValidatePlanesAtom(String name)

Method Detail

getPlaneId

public IntColumn getPlaneId()

A pointer to _pdbx_validate_planes.id This is an integer serial number.

Returns:

IntColumn

getId

public IntColumn getId()

The value of _pdbx_validate_planes_atom.id must uniquely identify each item in the PDBX_VALIDATE_PLANES_ATOM list. This is an integer serial number.

Returns:

IntColumn

getPDBModelNum

public IntColumn getPDBModelNum()

The model number for an atom site defining the plane This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

Part of the identifier of an atom site that defines the plane This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthCompId

public StrColumn getAuthCompId()

Part of the identifier of an atom site that defines the plane This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

Part of the identifier of an atom site that defines the plane This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getPDBInsCode

public StrColumn getPDBInsCode()

Optional identifier of an atom site that defines the plane

Returns:

StrColumn

getAuthAtomId

public StrColumn getAuthAtomId()

Part of the identifier of an atom site that defines the plane This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.

Returns:

StrColumn

getAtomDeviation

public FloatColumn getAtomDeviation()

The deviation from the plane per atom

Returns:

FloatColumn