Package org.rcsb.cif.model.generated

Class PdbxValidatePlanes

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxValidatePlanes

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxValidatePlanes
extends BaseCategory

Data items in the PDBX_VALIDATE_PLANES category list the residues that contain unexpected deviations from planes centers.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxValidatePlanes(String name)
PdbxValidatePlanes(String name, int rowCount, Object[] encodedColumns)
PdbxValidatePlanes(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	Part of the identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
StrColumn	getAuthCompId()	Part of the identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
StrColumn	getAuthSeqId()	Part of the identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
IntColumn	getId()	The value of _pdbx_validate_planes.id must uniquely identify each item in the PDBX_VALIDATE_PLANES list.
StrColumn	getLabelAltId()	Optional identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
StrColumn	getPDBInsCode()	Optional identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
IntColumn	getPDBModelNum()	The model number for the given angle This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
FloatColumn	getRmsd()	The value of the overall deviation from ideal plane for the atoms defining the plane.
StrColumn	getType()	The type of plane - MAIN CHAIN or SIDE CHAIN atoms

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxValidatePlanes

public PdbxValidatePlanes(String name,
                          Map<String,Column> columns)

PdbxValidatePlanes

public PdbxValidatePlanes(String name,
                          int rowCount,
                          Object[] encodedColumns)

PdbxValidatePlanes

public PdbxValidatePlanes(String name)

Method Detail

getId

public IntColumn getId()

The value of _pdbx_validate_planes.id must uniquely identify each item in the PDBX_VALIDATE_PLANES list. This is an integer serial number.

Returns:

IntColumn

getPDBModelNum

public IntColumn getPDBModelNum()

The model number for the given angle This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

Part of the identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthCompId

public StrColumn getAuthCompId()

Part of the identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

Part of the identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getPDBInsCode

public StrColumn getPDBInsCode()

Optional identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.

Returns:

StrColumn

getLabelAltId

public StrColumn getLabelAltId()

Optional identifier of the residue in which the plane is calculated This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.

Returns:

StrColumn

getRmsd

public FloatColumn getRmsd()

The value of the overall deviation from ideal plane for the atoms defining the plane.

Returns:

FloatColumn

getType

public StrColumn getType()

The type of plane - MAIN CHAIN or SIDE CHAIN atoms

Returns:

StrColumn