java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.PdbxValidatePeptideOmega

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxValidatePeptideOmega
extends BaseCategory
```
Data items in the PDBX_VALIDATE_PEPTIDE_OMEGA category list the residues that contain peptide bonds deviate significantly from both cis and trans conformation. cis bonds, if any, are listed on cispep records. trans is defined as 180 +/- 30 and cis is defined as 0 +/- 30 degrees.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`PdbxValidatePeptideOmega(String name)`
`PdbxValidatePeptideOmega(String name, int rowCount, Object[] encodedColumns)`
`PdbxValidatePeptideOmega(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StrColumn`	`getAuthAsymId1()`	Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
`StrColumn`	`getAuthAsymId2()`	Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
`StrColumn`	`getAuthCompId1()`	Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
`StrColumn`	`getAuthCompId2()`	Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
`StrColumn`	`getAuthSeqId1()`	Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
`StrColumn`	`getAuthSeqId2()`	Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
`IntColumn`	`getId()`	The value of _pdbx_validate_peptide_omega.id must uniquely identify each item in the PDBX_VALIDATE_PEPTIDE_OMEGA list.
`StrColumn`	`getLabelAltId1()`	Optional identifier of the first residue in the torsion angle This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
`StrColumn`	`getLabelAltId2()`	Optional identifier of the second residue in the torsion angle This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
`FloatColumn`	`getOmega()`	The value of the OMEGA angle for the peptide linkage between the two defined residues
`StrColumn`	`getPDBInsCode1()`	Optional identifier of the first residue in the bond This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
`StrColumn`	`getPDBInsCode2()`	Optional identifier of the second residue in the bond This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
`IntColumn`	`getPDBModelNum()`	The model number for the given residue This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - PdbxValidatePeptideOmega
```
public PdbxValidatePeptideOmega(String name,
                                Map<String,Column> columns)
```
  - PdbxValidatePeptideOmega
```
public PdbxValidatePeptideOmega(String name,
                                int rowCount,
                                Object[] encodedColumns)
```
  - PdbxValidatePeptideOmega
```
public PdbxValidatePeptideOmega(String name)
```
- Method Detail
  - getId
```
public IntColumn getId()
```
    The value of _pdbx_validate_peptide_omega.id must uniquely identify each item in the PDBX_VALIDATE_PEPTIDE_OMEGA list. This is an integer serial number.
    
    Returns:
    
    IntColumn
  - getPDBModelNum
```
public IntColumn getPDBModelNum()
```
    The model number for the given residue This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getAuthAsymId1
```
public StrColumn getAuthAsymId1()
```
    Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthAsymId2
```
public StrColumn getAuthAsymId2()
```
    Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthCompId1
```
public StrColumn getAuthCompId1()
```
    Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthCompId2
```
public StrColumn getAuthCompId2()
```
    Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthSeqId1
```
public StrColumn getAuthSeqId1()
```
    Part of the identifier of the first residue in the bond This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthSeqId2
```
public StrColumn getAuthSeqId2()
```
    Part of the identifier of the second residue in the bond This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPDBInsCode1
```
public StrColumn getPDBInsCode1()
```
    Optional identifier of the first residue in the bond This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPDBInsCode2
```
public StrColumn getPDBInsCode2()
```
    Optional identifier of the second residue in the bond This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelAltId1
```
public StrColumn getLabelAltId1()
```
    Optional identifier of the first residue in the torsion angle This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelAltId2
```
public StrColumn getLabelAltId2()
```
    Optional identifier of the second residue in the torsion angle This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getOmega
```
public FloatColumn getOmega()
```
    The value of the OMEGA angle for the peptide linkage between the two defined residues
    
    Returns:
    
    FloatColumn

Class PdbxValidatePeptideOmega

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

PdbxValidatePeptideOmega

PdbxValidatePeptideOmega

PdbxValidatePeptideOmega

Method Detail

getId

getPDBModelNum

getAuthAsymId1

getAuthAsymId2

getAuthCompId1

getAuthCompId2

getAuthSeqId1

getAuthSeqId2

getPDBInsCode1

getPDBInsCode2

getLabelAltId1

getLabelAltId2

getOmega