Package org.rcsb.cif.model.generated
Class PdbxValSymContact
- java.lang.Object
-
- org.rcsb.cif.model.BaseCategory
-
- org.rcsb.cif.model.generated.PdbxValSymContact
-
- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class PdbxValSymContact extends BaseCategory
The PDBX_VAL_SYM_CONTACT category lists symmetry related contacts amoung non-bonded atoms. For those contacts not involving hydrogen a limit of 2.2 Angstroms is used. For contacts involving a hydrogen atom a cutoff of 1.6 Angstrom is used. This is a completely derived category. Do not edit.
-
-
Field Summary
-
Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
-
-
Constructor Summary
Constructors Constructor Description PdbxValSymContact(String name)PdbxValSymContact(String name, int rowCount, Object[] encodedColumns)PdbxValSymContact(String name, Map<String,Column> columns)
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description StrColumngetAuthAsymId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthAsymId2()A component of the identifier for partner 2 of the close contact.StrColumngetAuthAtomId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthAtomId2()A component of the identifier for partner 2 of the close contact.StrColumngetAuthCompId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthCompId2()A component of the identifier for partner 2 of the close contact.StrColumngetAuthPDBInsertId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthPDBInsertId2()A component of the identifier for partner 2 of the close contact.StrColumngetAuthSeqId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthSeqId2()A component of the identifier for partner 2 of the close contact.FloatColumngetDist()The value of the close contact for the two atoms defined.IntColumngetId()The value of _pdbx_val_sym_contact.id must uniquely identify each item in the PDBX_VAL_SYM_CONTACT list.StrColumngetLabelAltId1()A component of the identifier for partner 1 of the close contact.StrColumngetLabelAltId2()A component of the identifier for partner 2 of the close contact.StrColumngetLabelAsymId1()A component of the identifier for partner 1 of the close contact.StrColumngetLabelAsymId2()A component of the identifier for partner 2 of the close contact.StrColumngetLabelAtomId1()A component of the identifier for partner 1 of the close contact.StrColumngetLabelAtomId2()A component of the identifier for partner 2 of the close contact.StrColumngetLabelCompId1()A component of the identifier for partner 1 of the close contact.StrColumngetLabelCompId2()A component of the identifier for partner 2 of the close contact.IntColumngetLabelSeqId1()A component of the identifier for partner 1 of the close contact.IntColumngetLabelSeqId2()A component of the identifier for partner 2 of the close contact.IntColumngetModelId()The model number for the given angleStrColumngetSiteSymmetry1()The symmetry operation applied to the first of the two atoms defining the close contact.StrColumngetSiteSymmetry2()The symmetry operation applied to the second of the two atoms defining the close contact.-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
-
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
-
Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
-
-
-
-
Method Detail
-
getId
public IntColumn getId()
The value of _pdbx_val_sym_contact.id must uniquely identify each item in the PDBX_VAL_SYM_CONTACT list. This is an integer serial number.- Returns:
- IntColumn
-
getModelId
public IntColumn getModelId()
The model number for the given angle- Returns:
- IntColumn
-
getAuthAsymId1
public StrColumn getAuthAsymId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthAtomId1
public StrColumn getAuthAtomId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthCompId1
public StrColumn getAuthCompId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthSeqId1
public StrColumn getAuthSeqId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthAtomId2
public StrColumn getAuthAtomId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthAsymId2
public StrColumn getAuthAsymId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthCompId2
public StrColumn getAuthCompId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthSeqId2
public StrColumn getAuthSeqId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthPDBInsertId1
public StrColumn getAuthPDBInsertId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthPDBInsertId2
public StrColumn getAuthPDBInsertId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAltId1
public StrColumn getLabelAltId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAsymId1
public StrColumn getLabelAsymId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAtomId1
public StrColumn getLabelAtomId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.- Returns:
- StrColumn
-
getLabelCompId1
public StrColumn getLabelCompId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelSeqId1
public IntColumn getLabelSeqId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
-
getLabelAltId2
public StrColumn getLabelAltId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAsymId2
public StrColumn getLabelAsymId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAtomId2
public StrColumn getLabelAtomId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.- Returns:
- StrColumn
-
getLabelCompId2
public StrColumn getLabelCompId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelSeqId2
public IntColumn getLabelSeqId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
-
getSiteSymmetry1
public StrColumn getSiteSymmetry1()
The symmetry operation applied to the first of the two atoms defining the close contact. The Symmetry equivalent position is given in the 'xyz' representation.- Returns:
- StrColumn
-
getSiteSymmetry2
public StrColumn getSiteSymmetry2()
The symmetry operation applied to the second of the two atoms defining the close contact. The Symmetry equivalent position is given in the 'xyz' representation.- Returns:
- StrColumn
-
getDist
public FloatColumn getDist()
The value of the close contact for the two atoms defined.- Returns:
- FloatColumn
-
-