Class PdbxValSymContact

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class PdbxValSymContact
    extends BaseCategory
    The PDBX_VAL_SYM_CONTACT category lists symmetry related contacts amoung non-bonded atoms. For those contacts not involving hydrogen a limit of 2.2 Angstroms is used. For contacts involving a hydrogen atom a cutoff of 1.6 Angstrom is used. This is a completely derived category. Do not edit.
    • Constructor Detail

      • PdbxValSymContact

        public PdbxValSymContact​(String name,
                                 int rowCount,
                                 Object[] encodedColumns)
      • PdbxValSymContact

        public PdbxValSymContact​(String name)
    • Method Detail

      • getId

        public IntColumn getId()
        The value of _pdbx_val_sym_contact.id must uniquely identify each item in the PDBX_VAL_SYM_CONTACT list. This is an integer serial number.
        Returns:
        IntColumn
      • getModelId

        public IntColumn getModelId()
        The model number for the given angle
        Returns:
        IntColumn
      • getAuthAsymId1

        public StrColumn getAuthAsymId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAtomId1

        public StrColumn getAuthAtomId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthCompId1

        public StrColumn getAuthCompId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthSeqId1

        public StrColumn getAuthSeqId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAtomId2

        public StrColumn getAuthAtomId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAsymId2

        public StrColumn getAuthAsymId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthCompId2

        public StrColumn getAuthCompId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthSeqId2

        public StrColumn getAuthSeqId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthPDBInsertId1

        public StrColumn getAuthPDBInsertId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthPDBInsertId2

        public StrColumn getAuthPDBInsertId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAltId1

        public StrColumn getLabelAltId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAsymId1

        public StrColumn getLabelAsymId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAtomId1

        public StrColumn getLabelAtomId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
        Returns:
        StrColumn
      • getLabelCompId1

        public StrColumn getLabelCompId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelSeqId1

        public IntColumn getLabelSeqId1()
        A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getLabelAltId2

        public StrColumn getLabelAltId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAsymId2

        public StrColumn getLabelAsymId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAtomId2

        public StrColumn getLabelAtomId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
        Returns:
        StrColumn
      • getLabelCompId2

        public StrColumn getLabelCompId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelSeqId2

        public IntColumn getLabelSeqId2()
        A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getSiteSymmetry1

        public StrColumn getSiteSymmetry1()
        The symmetry operation applied to the first of the two atoms defining the close contact. The Symmetry equivalent position is given in the 'xyz' representation.
        Returns:
        StrColumn
      • getSiteSymmetry2

        public StrColumn getSiteSymmetry2()
        The symmetry operation applied to the second of the two atoms defining the close contact. The Symmetry equivalent position is given in the 'xyz' representation.
        Returns:
        StrColumn
      • getDist

        public FloatColumn getDist()
        The value of the close contact for the two atoms defined.
        Returns:
        FloatColumn