Package org.rcsb.cif.model.generated
Class PdbxValContact
- java.lang.Object
-
- org.rcsb.cif.model.BaseCategory
-
- org.rcsb.cif.model.generated.PdbxValContact
-
- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class PdbxValContact extends BaseCategory
The PDBX_VAL_CONTACT category lists non-bonded atoms within the assymetric unit of the entry that are in close contact. For those contacts not involving hydrogen a limit of 2.2 Angstroms is used. For contacts involving a hydrogen atom a cutoff of 1.6 Angstrom is used. This is a completely derived category. Do not edit.
-
-
Field Summary
-
Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
-
-
Constructor Summary
Constructors Constructor Description PdbxValContact(String name)PdbxValContact(String name, int rowCount, Object[] encodedColumns)PdbxValContact(String name, Map<String,Column> columns)
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description StrColumngetAuthAsymId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthAsymId2()A component of the identifier for partner 2 of the close contact.StrColumngetAuthAtomId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthAtomId2()A component of the identifier for partner 2 of the close contact.StrColumngetAuthCompId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthCompId2()A component of the identifier for partner 2 of the close contact.StrColumngetAuthPDBInsertId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthPDBInsertId2()A component of the identifier for partner 2 of the close contact.StrColumngetAuthSeqId1()A component of the identifier for partner 1 of the close contact.StrColumngetAuthSeqId2()A component of the identifier for partner 2 of the close contact.FloatColumngetDist()The value of the close contact for the two atoms defined.IntColumngetId()The value of _pdbx_val_contact.id must uniquely identify each item in the PDBX_VAL_CONTACT list.StrColumngetLabelAltId1()A component of the identifier for partner 1 of the close contact.StrColumngetLabelAltId2()A component of the identifier for partner 2 of the close contact.StrColumngetLabelAsymId1()A component of the identifier for partner 1 of the close contact.StrColumngetLabelAsymId2()A component of the identifier for partner 2 of the close contact.StrColumngetLabelAtomId1()A component of the identifier for partner 1 of the close contact.StrColumngetLabelAtomId2()A component of the identifier for partner 2 of the close contact.StrColumngetLabelCompId1()A component of the identifier for partner 1 of the close contact.StrColumngetLabelCompId2()A component of the identifier for partner 2 of the close contact.IntColumngetLabelSeqId1()A component of the identifier for partner 1 of the close contact.IntColumngetLabelSeqId2()A component of the identifier for partner 2 of the close contact.IntColumngetModelId()The model number for the given angle-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
-
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
-
Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
-
-
-
-
Method Detail
-
getId
public IntColumn getId()
The value of _pdbx_val_contact.id must uniquely identify each item in the PDBX_VAL_CONTACT list. This is an integer serial number.- Returns:
- IntColumn
-
getModelId
public IntColumn getModelId()
The model number for the given angle- Returns:
- IntColumn
-
getAuthAsymId1
public StrColumn getAuthAsymId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthAtomId1
public StrColumn getAuthAtomId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthCompId1
public StrColumn getAuthCompId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthSeqId1
public StrColumn getAuthSeqId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthAtomId2
public StrColumn getAuthAtomId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthAsymId2
public StrColumn getAuthAsymId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthCompId2
public StrColumn getAuthCompId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthSeqId2
public StrColumn getAuthSeqId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthPDBInsertId1
public StrColumn getAuthPDBInsertId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.- Returns:
- StrColumn
-
getAuthPDBInsertId2
public StrColumn getAuthPDBInsertId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAltId1
public StrColumn getLabelAltId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAsymId1
public StrColumn getLabelAsymId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAtomId1
public StrColumn getLabelAtomId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.- Returns:
- StrColumn
-
getLabelCompId1
public StrColumn getLabelCompId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelSeqId1
public IntColumn getLabelSeqId1()
A component of the identifier for partner 1 of the close contact. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
-
getLabelAltId2
public StrColumn getLabelAltId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAsymId2
public StrColumn getLabelAsymId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelAtomId2
public StrColumn getLabelAtomId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.- Returns:
- StrColumn
-
getLabelCompId2
public StrColumn getLabelCompId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
-
getLabelSeqId2
public IntColumn getLabelSeqId2()
A component of the identifier for partner 2 of the close contact. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
-
getDist
public FloatColumn getDist()
The value of the close contact for the two atoms defined.- Returns:
- FloatColumn
-
-