Package org.rcsb.cif.model.generated
Class PdbxValAngle
- java.lang.Object
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- org.rcsb.cif.model.BaseCategory
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- org.rcsb.cif.model.generated.PdbxValAngle
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- All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.generator.SchemaGenerator") public class PdbxValAngle extends BaseCategory
The PDBX_VAL_ANGLE category lists the covalent bond angles in this entry deviating by greater than 6*sigma from standard values. This is a completely derived category. Do not edit.
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Field Summary
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Fields inherited from class org.rcsb.cif.model.BaseCategory
isText, textFields
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Constructor Summary
Constructors Constructor Description PdbxValAngle(String name)PdbxValAngle(String name, int rowCount, Object[] encodedColumns)PdbxValAngle(String name, Map<String,Column> columns)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description FloatColumngetAngle()Value of the angle deviating by more than 6*RMSD from the expected dictionary value.FloatColumngetAngleDeviation()Value of the deviation (in degrees) from 6*RMSD for the angle bounded by the three sites from the expected dictionary valueStrColumngetAuthAsymId1()Identifier of the first of the three atom sites that define the angle.StrColumngetAuthAsymId2()Identifier of the second of the three atom sites that define the angle.StrColumngetAuthAsymId3()Identifier of the third of the three atom sites that define the angle.StrColumngetAuthAtomId1()Identifier of the first of the three atom sites that define the angle.StrColumngetAuthAtomId2()Identifier of the second of the three atom sites that define the angle.StrColumngetAuthAtomId3()Identifier of the third of the three atom sites that define the angle.StrColumngetAuthCompId1()Identifier of the first of the three atom sites that define the angle.StrColumngetAuthCompId2()Identifier of the second of the three atom sites that define the angle.StrColumngetAuthCompId3()Identifier of the third of the three atom sites that define the angle.StrColumngetAuthPDBInsertId1()Optional identifier of the first of the three atom sites that define the angle.StrColumngetAuthPDBInsertId2()Optional identifier of the second of the three atom sites that define the angle.StrColumngetAuthPDBInsertId3()Optional identifier of the third of the three atom sites that define the angle.StrColumngetAuthSeqId1()Identifier of the first of the three atom sites that define the angle.StrColumngetAuthSeqId2()Identifier of the second of the three atom sites that define the angle.StrColumngetAuthSeqId3()Identifier of the third of the three atom sites that define the angle.IntColumngetId()The value of _pdbx_val_angle.id must uniquely identify each item in the PDBX_VAL_ANGLE list.StrColumngetLabelAltId1()A component of the identifier for partner 1 of the angle connection.StrColumngetLabelAltId2()A component of the identifier for partner 2 of the angle connection.StrColumngetLabelAltId3()A component of the identifier for partner 3 of the angle connection.StrColumngetLabelAsymId1()A component of the identifier for partner 1 of the angle connection.StrColumngetLabelAsymId2()A component of the identifier for partner 2 of the angle connection.StrColumngetLabelAsymId3()A component of the identifier for partner 3 of the angle connection.StrColumngetLabelAtomId1()A component of the identifier for partner 1 of the angle connection.StrColumngetLabelAtomId2()A component of the identifier for partner 2 of the angle connection.StrColumngetLabelAtomId3()A component of the identifier for partner 3 of the angle connection.StrColumngetLabelCompId1()A component of the identifier for partner 1 of the angle connection.StrColumngetLabelCompId2()A component of the identifier for partner 2 of the angle connection.StrColumngetLabelCompId3()A component of the identifier for partner 3 of the angle connection.IntColumngetLabelSeqId1()A component of the identifier for partner 1 of the angle connection.IntColumngetLabelSeqId2()A component of the identifier for partner 2 of the angle connection.IntColumngetLabelSeqId3()A component of the identifier for partner 3 of the angle connection.IntColumngetModelId()The model number for the given angle-
Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get
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Method Detail
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getId
public IntColumn getId()
The value of _pdbx_val_angle.id must uniquely identify each item in the PDBX_VAL_ANGLE list. This is an integer serial number.- Returns:
- IntColumn
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getModelId
public IntColumn getModelId()
The model number for the given angle- Returns:
- IntColumn
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getAuthAsymId1
public StrColumn getAuthAsymId1()
Identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAtomId1
public StrColumn getAuthAtomId1()
Identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthCompId1
public StrColumn getAuthCompId1()
Identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthSeqId1
public StrColumn getAuthSeqId1()
Identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAtomId2
public StrColumn getAuthAtomId2()
Identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAsymId2
public StrColumn getAuthAsymId2()
Identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthCompId2
public StrColumn getAuthCompId2()
Identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthSeqId2
public StrColumn getAuthSeqId2()
Identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAtomId3
public StrColumn getAuthAtomId3()
Identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthAsymId3
public StrColumn getAuthAsymId3()
Identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthCompId3
public StrColumn getAuthCompId3()
Identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthSeqId3
public StrColumn getAuthSeqId3()
Identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.- Returns:
- StrColumn
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getAuthPDBInsertId1
public StrColumn getAuthPDBInsertId1()
Optional identifier of the first of the three atom sites that define the angle.- Returns:
- StrColumn
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getAuthPDBInsertId2
public StrColumn getAuthPDBInsertId2()
Optional identifier of the second of the three atom sites that define the angle.- Returns:
- StrColumn
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getAuthPDBInsertId3
public StrColumn getAuthPDBInsertId3()
Optional identifier of the third of the three atom sites that define the angle.- Returns:
- StrColumn
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getLabelAltId1
public StrColumn getLabelAltId1()
A component of the identifier for partner 1 of the angle connection.- Returns:
- StrColumn
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getLabelAsymId1
public StrColumn getLabelAsymId1()
A component of the identifier for partner 1 of the angle connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelAtomId1
public StrColumn getLabelAtomId1()
A component of the identifier for partner 1 of the angle connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.- Returns:
- StrColumn
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getLabelCompId1
public StrColumn getLabelCompId1()
A component of the identifier for partner 1 of the angle connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelSeqId1
public IntColumn getLabelSeqId1()
A component of the identifier for partner 1 of the angle connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getLabelAltId2
public StrColumn getLabelAltId2()
A component of the identifier for partner 2 of the angle connection.- Returns:
- StrColumn
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getLabelAsymId2
public StrColumn getLabelAsymId2()
A component of the identifier for partner 2 of the angle connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelAtomId2
public StrColumn getLabelAtomId2()
A component of the identifier for partner 2 of the angle connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.- Returns:
- StrColumn
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getLabelCompId2
public StrColumn getLabelCompId2()
A component of the identifier for partner 2 of the angle connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelSeqId2
public IntColumn getLabelSeqId2()
A component of the identifier for partner 2 of the angle connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getLabelAltId3
public StrColumn getLabelAltId3()
A component of the identifier for partner 3 of the angle connection.- Returns:
- StrColumn
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getLabelAsymId3
public StrColumn getLabelAsymId3()
A component of the identifier for partner 3 of the angle connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelAtomId3
public StrColumn getLabelAtomId3()
A component of the identifier for partner 3 of the angle connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.- Returns:
- StrColumn
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getLabelCompId3
public StrColumn getLabelCompId3()
A component of the identifier for partner 3 of the angle connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.- Returns:
- StrColumn
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getLabelSeqId3
public IntColumn getLabelSeqId3()
A component of the identifier for partner 3 of the angle connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.- Returns:
- IntColumn
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getAngle
public FloatColumn getAngle()
Value of the angle deviating by more than 6*RMSD from the expected dictionary value.- Returns:
- FloatColumn
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getAngleDeviation
public FloatColumn getAngleDeviation()
Value of the deviation (in degrees) from 6*RMSD for the angle bounded by the three sites from the expected dictionary value- Returns:
- FloatColumn
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