Class PdbxValAngle

  • All Implemented Interfaces:
    Category

    @Generated("org.rcsb.cif.generator.SchemaGenerator")
    public class PdbxValAngle
    extends BaseCategory
    The PDBX_VAL_ANGLE category lists the covalent bond angles in this entry deviating by greater than 6*sigma from standard values. This is a completely derived category. Do not edit.
    • Constructor Detail

      • PdbxValAngle

        public PdbxValAngle​(String name,
                            int rowCount,
                            Object[] encodedColumns)
      • PdbxValAngle

        public PdbxValAngle​(String name)
    • Method Detail

      • getId

        public IntColumn getId()
        The value of _pdbx_val_angle.id must uniquely identify each item in the PDBX_VAL_ANGLE list. This is an integer serial number.
        Returns:
        IntColumn
      • getModelId

        public IntColumn getModelId()
        The model number for the given angle
        Returns:
        IntColumn
      • getAuthAsymId1

        public StrColumn getAuthAsymId1()
        Identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAtomId1

        public StrColumn getAuthAtomId1()
        Identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthCompId1

        public StrColumn getAuthCompId1()
        Identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthSeqId1

        public StrColumn getAuthSeqId1()
        Identifier of the first of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAtomId2

        public StrColumn getAuthAtomId2()
        Identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAsymId2

        public StrColumn getAuthAsymId2()
        Identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthCompId2

        public StrColumn getAuthCompId2()
        Identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthSeqId2

        public StrColumn getAuthSeqId2()
        Identifier of the second of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAtomId3

        public StrColumn getAuthAtomId3()
        Identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthAsymId3

        public StrColumn getAuthAsymId3()
        Identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthCompId3

        public StrColumn getAuthCompId3()
        Identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthSeqId3

        public StrColumn getAuthSeqId3()
        Identifier of the third of the three atom sites that define the angle. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getAuthPDBInsertId1

        public StrColumn getAuthPDBInsertId1()
        Optional identifier of the first of the three atom sites that define the angle.
        Returns:
        StrColumn
      • getAuthPDBInsertId2

        public StrColumn getAuthPDBInsertId2()
        Optional identifier of the second of the three atom sites that define the angle.
        Returns:
        StrColumn
      • getAuthPDBInsertId3

        public StrColumn getAuthPDBInsertId3()
        Optional identifier of the third of the three atom sites that define the angle.
        Returns:
        StrColumn
      • getLabelAltId1

        public StrColumn getLabelAltId1()
        A component of the identifier for partner 1 of the angle connection.
        Returns:
        StrColumn
      • getLabelAsymId1

        public StrColumn getLabelAsymId1()
        A component of the identifier for partner 1 of the angle connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAtomId1

        public StrColumn getLabelAtomId1()
        A component of the identifier for partner 1 of the angle connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
        Returns:
        StrColumn
      • getLabelCompId1

        public StrColumn getLabelCompId1()
        A component of the identifier for partner 1 of the angle connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelSeqId1

        public IntColumn getLabelSeqId1()
        A component of the identifier for partner 1 of the angle connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getLabelAltId2

        public StrColumn getLabelAltId2()
        A component of the identifier for partner 2 of the angle connection.
        Returns:
        StrColumn
      • getLabelAsymId2

        public StrColumn getLabelAsymId2()
        A component of the identifier for partner 2 of the angle connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAtomId2

        public StrColumn getLabelAtomId2()
        A component of the identifier for partner 2 of the angle connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
        Returns:
        StrColumn
      • getLabelCompId2

        public StrColumn getLabelCompId2()
        A component of the identifier for partner 2 of the angle connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelSeqId2

        public IntColumn getLabelSeqId2()
        A component of the identifier for partner 2 of the angle connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getLabelAltId3

        public StrColumn getLabelAltId3()
        A component of the identifier for partner 3 of the angle connection.
        Returns:
        StrColumn
      • getLabelAsymId3

        public StrColumn getLabelAsymId3()
        A component of the identifier for partner 3 of the angle connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelAtomId3

        public StrColumn getLabelAtomId3()
        A component of the identifier for partner 3 of the angle connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
        Returns:
        StrColumn
      • getLabelCompId3

        public StrColumn getLabelCompId3()
        A component of the identifier for partner 3 of the angle connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn
      • getLabelSeqId3

        public IntColumn getLabelSeqId3()
        A component of the identifier for partner 3 of the angle connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn
      • getAngle

        public FloatColumn getAngle()
        Value of the angle deviating by more than 6*RMSD from the expected dictionary value.
        Returns:
        FloatColumn
      • getAngleDeviation

        public FloatColumn getAngleDeviation()
        Value of the deviation (in degrees) from 6*RMSD for the angle bounded by the three sites from the expected dictionary value
        Returns:
        FloatColumn