java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.PdbxSugarPhosphateGeometry

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxSugarPhosphateGeometry
extends BaseCategory
```
Data items in the PDBX_SUGAR_PHOSPHATE_GEOMETRY record the RMS deviations covalent geometry for each momoner relative to small molecule crystal standards.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`PdbxSugarPhosphateGeometry(String name)`
`PdbxSugarPhosphateGeometry(String name, int rowCount, Object[] encodedColumns)`
`PdbxSugarPhosphateGeometry(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StrColumn`	`getAuthAsymId()`	This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
`StrColumn`	`getAuthSeqId()`	This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
`FloatColumn`	`getC1C2()`	The c1_c2 covalent element of this monomer.
`FloatColumn`	`getC1C2C3()`	The c1_c2_c3 covalent element of this monomer.
`FloatColumn`	`getC1C2C3C4()`	The c1_c2_c3_c4 covalent element of this monomer.
`FloatColumn`	`getC1N19C24()`	The c1_n1_9_c2_4 covalent element of this monomer.
`FloatColumn`	`getC1N19C68()`	The c1_n1_9_c6_8 covalent element of this monomer.
`FloatColumn`	`getC1N91()`	The c1_n9_1 covalent element of this monomer.
`FloatColumn`	`getC2C1N19()`	The c2_c1_n1_9 covalent element of this monomer.
`FloatColumn`	`getC2C3()`	The c2_c3 covalent element of this monomer.
`FloatColumn`	`getC2C3C4()`	The c2_c3_c4 covalent element of this monomer.
`FloatColumn`	`getC2C3C4O4()`	The c2_c3_c4_o4 covalent element of this monomer.
`FloatColumn`	`getC2C3O3()`	The c2_c3_o3 covalent element of this monomer.
`FloatColumn`	`getC3C4()`	The c3_c4 covalent element of this monomer.
`FloatColumn`	`getC3C4O4()`	The c3_c4_o4 covalent element of this monomer.
`FloatColumn`	`getC3C4O4C1()`	The c3_c4_o4_c1 covalent element of this monomer.
`FloatColumn`	`getC3O3()`	The c3_o3 covalent element of this monomer.
`FloatColumn`	`getC3O3P()`	The c3_o3_p covalent element of this monomer.
`FloatColumn`	`getC3O3PO5()`	The c3_o3_p_o5 covalent element of this monomer.
`FloatColumn`	`getC4C3O3()`	The c4_c3_o3 covalent element of this monomer.
`FloatColumn`	`getC4C3O3P()`	The c4_c3_o3_p covalent element of this monomer.
`FloatColumn`	`getC4O4()`	The c4_o4 covalent element of this monomer.
`FloatColumn`	`getC4O4C1()`	The c4_o4_c1 covalent element of this monomer.
`FloatColumn`	`getC4O4C1C2()`	The c4_o4_c1_c2 covalent element of this monomer.
`FloatColumn`	`getC4O4C1N19()`	The c4_o4_c1_n1_9 covalent element of this monomer.
`FloatColumn`	`getC5C4()`	The c5_c4 covalent element of this monomer.
`FloatColumn`	`getC5C4C3()`	The c5_c4_c3 covalent element of this monomer.
`FloatColumn`	`getC5C4C3C2()`	The c5_c4_c3_c2 covalent element of this monomer.
`FloatColumn`	`getC5C4C3O3()`	The c5_c4_c3_o3 covalent element of this monomer.
`FloatColumn`	`getC5C4O4()`	The c5_c4_o4 covalent element of this monomer.
`IntColumn`	`getId()`	The value of _pdbx_sugar_phosphate_geometry.id must uniquely identify each item in the PDBX_SUGAR_PHOSPHATE_GEOMETRY list.
`StrColumn`	`getLabelAsymId()`	This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
`StrColumn`	`getLabelCompId()`	This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
`IntColumn`	`getLabelSeqId()`	This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
`FloatColumn`	`getMaxtorsion()`	The maximum torsion value sigma-m, c1_c2_c3_c4/cos(P) of this monomer.
`IntColumn`	`getModelId()`	The model number
`FloatColumn`	`getN1C2()`	The n1_c2 covalent element of this monomer.
`FloatColumn`	`getN1C6()`	The n1_c6 covalent element of this monomer.
`FloatColumn`	`getN9C4()`	The n9_c4 covalent element of this monomer.
`FloatColumn`	`getN9C8()`	The n9_c8 covalent element of this monomer.
`StrColumn`	`getNeighborCompId3prime()`	Neighbor component in the 3' direction.
`StrColumn`	`getNeighborCompId5prime()`	Neighbor component in the 5' direction.
`FloatColumn`	`getNextC3O3PO5()`	The next_c3_o3_p_o5 covalent element of this monomer.
`FloatColumn`	`getNextC4C3O3P()`	The next_c4_c3_o3_p covalent element of this monomer.
`FloatColumn`	`getNextC4O4C1N19()`	The next_c4_o4_c1_n1_9 covalent element of this monomer.
`FloatColumn`	`getNextC5C4C3O3()`	The next_c5_c4_c3_o3 covalent element of this monomer.
`StrColumn`	`getNextLabelCompId()`	The next_label_comp_id covalent element of this monomer.
`IntColumn`	`getNextLabelSeqId()`	The next_label_seq_id covalent element of this monomer.
`FloatColumn`	`getNextO3PO5C5()`	The next_o3_p_o5_c5 covalent element of this monomer.
`FloatColumn`	`getNextO4C1N19C24()`	The next_o4_c1_n1_9_c2_4 covalent element of this monomer.
`FloatColumn`	`getNextO5C5C4C3()`	The next_o5_c5_c4_c3 covalent element of this monomer.
`FloatColumn`	`getNextPO5C5C4()`	The next_p_o5_c5_c4 covalent element of this monomer.
`FloatColumn`	`getO1pPO2p()`	The o1p_p_o2p covalent element of this monomer.
`FloatColumn`	`getO3C3C2O2()`	The o3_c3_c2_o2 covalent element of this monomer.
`FloatColumn`	`getO3P()`	The o3_p covalent element of this monomer.
`FloatColumn`	`getO3PO5()`	The o3_p_o5 covalent element of this monomer.
`FloatColumn`	`getO3PO5C5()`	The o3_p_o5_c5 covalent element of this monomer.
`FloatColumn`	`getO4C1()`	The o4_c1 covalent element of this monomer.
`FloatColumn`	`getO4C1C2()`	The o4_c1_c2 covalent element of this monomer.
`FloatColumn`	`getO4C1C2C3()`	The o4_c1_c2_c3 covalent element of this monomer.
`FloatColumn`	`getO4C1N19()`	The o4_c1_n1_9 covalent element of this monomer.
`FloatColumn`	`getO4C1N19C24()`	The o4_c1_n1_9_c2_4 covalent element of this monomer.
`FloatColumn`	`getO4C1N19C68()`	The o4_c1_n1_9_c6_8 covalent element of this monomer.
`FloatColumn`	`getO4C4C3O3()`	The o4_c4_c3_o3 covalent element of this monomer.
`FloatColumn`	`getO5C5()`	The o5_c5 covalent element of this monomer.
`FloatColumn`	`getO5C5C4()`	The o5_c5_c4 covalent element of this monomer.
`FloatColumn`	`getO5C5C4C3()`	The o5_c5_c4_c3 covalent element of this monomer.
`FloatColumn`	`getO5C5C4O4()`	The o5_c5_c4_o4 covalent element of this monomer.
`FloatColumn`	`getPO1p()`	The p_o1p covalent element of this monomer.
`FloatColumn`	`getPO2p()`	The p_o2p covalent element of this monomer.
`FloatColumn`	`getPO5()`	The p_o5 covalent element of this monomer.
`FloatColumn`	`getPO5C5()`	The p_o5_c5 covalent element of this monomer.
`FloatColumn`	`getPO5C5C4()`	The p_o5_c5_c4 covalent element of this monomer.
`FloatColumn`	`getPseudorot()`	The pseudo rotation angle of this monomer.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - PdbxSugarPhosphateGeometry
```
public PdbxSugarPhosphateGeometry(String name,
                                  Map<String,Column> columns)
```
  - PdbxSugarPhosphateGeometry
```
public PdbxSugarPhosphateGeometry(String name,
                                  int rowCount,
                                  Object[] encodedColumns)
```
  - PdbxSugarPhosphateGeometry
```
public PdbxSugarPhosphateGeometry(String name)
```
- Method Detail
  - getId
```
public IntColumn getId()
```
    The value of _pdbx_sugar_phosphate_geometry.id must uniquely identify each item in the PDBX_SUGAR_PHOSPHATE_GEOMETRY list. This is an integer serial number.
    
    Returns:
    
    IntColumn
  - getModelId
```
public IntColumn getModelId()
```
    The model number
    
    Returns:
    
    IntColumn
  - getAuthAsymId
```
public StrColumn getAuthAsymId()
```
    This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelAsymId
```
public StrColumn getLabelAsymId()
```
    This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelCompId
```
public StrColumn getLabelCompId()
```
    This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthSeqId
```
public StrColumn getAuthSeqId()
```
    This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelSeqId
```
public IntColumn getLabelSeqId()
```
    This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getNeighborCompId5prime
```
public StrColumn getNeighborCompId5prime()
```
    Neighbor component in the 5' direction. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getNeighborCompId3prime
```
public StrColumn getNeighborCompId3prime()
```
    Neighbor component in the 3' direction. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getO3PO5C5
```
public FloatColumn getO3PO5C5()
```
    The o3_p_o5_c5 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getPO5C5C4
```
public FloatColumn getPO5C5C4()
```
    The p_o5_c5_c4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO5C5C4C3
```
public FloatColumn getO5C5C4C3()
```
    The o5_c5_c4_c3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC5C4C3O3
```
public FloatColumn getC5C4C3O3()
```
    The c5_c4_c3_o3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC4C3O3P
```
public FloatColumn getC4C3O3P()
```
    The c4_c3_o3_p covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC3O3PO5
```
public FloatColumn getC3O3PO5()
```
    The c3_o3_p_o5 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC4O4C1N19
```
public FloatColumn getC4O4C1N19()
```
    The c4_o4_c1_n1_9 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO4C1N19C24
```
public FloatColumn getO4C1N19C24()
```
    The o4_c1_n1_9_c2_4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO4C1N19C68
```
public FloatColumn getO4C1N19C68()
```
    The o4_c1_n1_9_c6_8 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC4O4C1C2
```
public FloatColumn getC4O4C1C2()
```
    The c4_o4_c1_c2 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO4C1C2C3
```
public FloatColumn getO4C1C2C3()
```
    The o4_c1_c2_c3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC1C2C3C4
```
public FloatColumn getC1C2C3C4()
```
    The c1_c2_c3_c4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC2C3C4O4
```
public FloatColumn getC2C3C4O4()
```
    The c2_c3_c4_o4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC3C4O4C1
```
public FloatColumn getC3C4O4C1()
```
    The c3_c4_o4_c1 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC5C4C3C2
```
public FloatColumn getC5C4C3C2()
```
    The c5_c4_c3_c2 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO4C4C3O3
```
public FloatColumn getO4C4C3O3()
```
    The o4_c4_c3_o3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO3C3C2O2
```
public FloatColumn getO3C3C2O2()
```
    The o3_c3_c2_o2 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO5C5C4O4
```
public FloatColumn getO5C5C4O4()
```
    The o5_c5_c4_o4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getPseudorot
```
public FloatColumn getPseudorot()
```
    The pseudo rotation angle of this monomer.
    
    Returns:
    
    FloatColumn
  - getMaxtorsion
```
public FloatColumn getMaxtorsion()
```
    The maximum torsion value sigma-m, c1_c2_c3_c4/cos(P) of this monomer.
    
    Returns:
    
    FloatColumn
  - getNextLabelCompId
```
public StrColumn getNextLabelCompId()
```
    The next_label_comp_id covalent element of this monomer.
    
    Returns:
    
    StrColumn
  - getNextLabelSeqId
```
public IntColumn getNextLabelSeqId()
```
    The next_label_seq_id covalent element of this monomer.
    
    Returns:
    
    IntColumn
  - getNextO3PO5C5
```
public FloatColumn getNextO3PO5C5()
```
    The next_o3_p_o5_c5 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getNextPO5C5C4
```
public FloatColumn getNextPO5C5C4()
```
    The next_p_o5_c5_c4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getNextO5C5C4C3
```
public FloatColumn getNextO5C5C4C3()
```
    The next_o5_c5_c4_c3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getNextC5C4C3O3
```
public FloatColumn getNextC5C4C3O3()
```
    The next_c5_c4_c3_o3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getNextC4C3O3P
```
public FloatColumn getNextC4C3O3P()
```
    The next_c4_c3_o3_p covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getNextC3O3PO5
```
public FloatColumn getNextC3O3PO5()
```
    The next_c3_o3_p_o5 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getNextC4O4C1N19
```
public FloatColumn getNextC4O4C1N19()
```
    The next_c4_o4_c1_n1_9 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getNextO4C1N19C24
```
public FloatColumn getNextO4C1N19C24()
```
    The next_o4_c1_n1_9_c2_4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC1C2
```
public FloatColumn getC1C2()
```
    The c1_c2 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC2C3
```
public FloatColumn getC2C3()
```
    The c2_c3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC3C4
```
public FloatColumn getC3C4()
```
    The c3_c4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC4O4
```
public FloatColumn getC4O4()
```
    The c4_o4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO4C1
```
public FloatColumn getO4C1()
```
    The o4_c1 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getPO5
```
public FloatColumn getPO5()
```
    The p_o5 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO5C5
```
public FloatColumn getO5C5()
```
    The o5_c5 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC5C4
```
public FloatColumn getC5C4()
```
    The c5_c4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC3O3
```
public FloatColumn getC3O3()
```
    The c3_o3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO3P
```
public FloatColumn getO3P()
```
    The o3_p covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getPO1p
```
public FloatColumn getPO1p()
```
    The p_o1p covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getPO2p
```
public FloatColumn getPO2p()
```
    The p_o2p covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC1N91
```
public FloatColumn getC1N91()
```
    The c1_n9_1 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getN1C2
```
public FloatColumn getN1C2()
```
    The n1_c2 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getN1C6
```
public FloatColumn getN1C6()
```
    The n1_c6 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getN9C4
```
public FloatColumn getN9C4()
```
    The n9_c4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getN9C8
```
public FloatColumn getN9C8()
```
    The n9_c8 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC1C2C3
```
public FloatColumn getC1C2C3()
```
    The c1_c2_c3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC2C3C4
```
public FloatColumn getC2C3C4()
```
    The c2_c3_c4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC3C4O4
```
public FloatColumn getC3C4O4()
```
    The c3_c4_o4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC4O4C1
```
public FloatColumn getC4O4C1()
```
    The c4_o4_c1 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO4C1C2
```
public FloatColumn getO4C1C2()
```
    The o4_c1_c2 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getPO5C5
```
public FloatColumn getPO5C5()
```
    The p_o5_c5 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO5C5C4
```
public FloatColumn getO5C5C4()
```
    The o5_c5_c4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC5C4C3
```
public FloatColumn getC5C4C3()
```
    The c5_c4_c3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC4C3O3
```
public FloatColumn getC4C3O3()
```
    The c4_c3_o3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC3O3P
```
public FloatColumn getC3O3P()
```
    The c3_o3_p covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO3PO5
```
public FloatColumn getO3PO5()
```
    The o3_p_o5 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO4C1N19
```
public FloatColumn getO4C1N19()
```
    The o4_c1_n1_9 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC1N19C24
```
public FloatColumn getC1N19C24()
```
    The c1_n1_9_c2_4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC5C4O4
```
public FloatColumn getC5C4O4()
```
    The c5_c4_o4 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC2C3O3
```
public FloatColumn getC2C3O3()
```
    The c2_c3_o3 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getO1pPO2p
```
public FloatColumn getO1pPO2p()
```
    The o1p_p_o2p covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC2C1N19
```
public FloatColumn getC2C1N19()
```
    The c2_c1_n1_9 covalent element of this monomer.
    
    Returns:
    
    FloatColumn
  - getC1N19C68
```
public FloatColumn getC1N19C68()
```
    The c1_n1_9_c6_8 covalent element of this monomer.
    
    Returns:
    
    FloatColumn

Class PdbxSugarPhosphateGeometry

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

PdbxSugarPhosphateGeometry

PdbxSugarPhosphateGeometry

PdbxSugarPhosphateGeometry

Method Detail

getId

getModelId

getAuthAsymId

getLabelAsymId

getLabelCompId

getAuthSeqId

getLabelSeqId

getNeighborCompId5prime

getNeighborCompId3prime

getO3PO5C5

getPO5C5C4

getO5C5C4C3

getC5C4C3O3

getC4C3O3P

getC3O3PO5

getC4O4C1N19

getO4C1N19C24

getO4C1N19C68

getC4O4C1C2

getO4C1C2C3

getC1C2C3C4

getC2C3C4O4

getC3C4O4C1

getC5C4C3C2

getO4C4C3O3

getO3C3C2O2

getO5C5C4O4

getPseudorot

getMaxtorsion

getNextLabelCompId

getNextLabelSeqId

getNextO3PO5C5

getNextPO5C5C4

getNextO5C5C4C3

getNextC5C4C3O3

getNextC4C3O3P

getNextC3O3PO5

getNextC4O4C1N19

getNextO4C1N19C24

getC1C2

getC2C3

getC3C4

getC4O4

getO4C1

getPO5

getO5C5

getC5C4

getC3O3

getO3P

getPO1p

getPO2p

getC1N91

getN1C2

getN1C6

getN9C4

getN9C8

getC1C2C3

getC2C3C4

getC3C4O4

getC4O4C1

getO4C1C2

getPO5C5

getO5C5C4

getC5C4C3

getC4C3O3

getC3O3P

getO3PO5