Package org.rcsb.cif.model.generated

Class PdbxStructRefSeqInsertion

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStructRefSeqInsertion

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructRefSeqInsertion
extends BaseCategory

Data items in the PDBX_STRUCT_REF_SEQ_INSERTION category annotate insertions in the sequence of the entity described in the referenced database entry.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStructRefSeqInsertion(String name)
PdbxStructRefSeqInsertion(String name, int rowCount, Object[] encodedColumns)
PdbxStructRefSeqInsertion(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAsymId()	Part of the identifier of the inserted residue.
StrColumn	getAuthAsymId()	Part of the author identifier of the inserted residue.
StrColumn	getAuthSeqId()	Part of the author identifier of the inserted residue.
StrColumn	getCompId()	Part of the identifier of the inserted residue.
StrColumn	getDbCode()	The code for this entity or biological unit or for a closely related entity or biological unit in the named database.
StrColumn	getDbName()	The name of the database containing reference information about this entity or biological unit.
StrColumn	getDetails()	A description of any special aspects of the insertion
StrColumn	getId()	The value of _pdbx_struct_ref_seq_insertion.id must uniquely identify a record in the PDBX_STRUCT_REF_SEQ_INSERTION list.
StrColumn	getPDBInsCode()	Part of the author identifier of the inserted residue.
IntColumn	getSeqId()	Part of the author identifier of the inserted residue.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStructRefSeqInsertion

public PdbxStructRefSeqInsertion(String name,
                                 Map<String,Column> columns)

PdbxStructRefSeqInsertion

public PdbxStructRefSeqInsertion(String name,
                                 int rowCount,
                                 Object[] encodedColumns)

PdbxStructRefSeqInsertion

public PdbxStructRefSeqInsertion(String name)

Method Detail

getId

public StrColumn getId()

The value of _pdbx_struct_ref_seq_insertion.id must uniquely identify a record in the PDBX_STRUCT_REF_SEQ_INSERTION list.

Returns:

StrColumn

getCompId

public StrColumn getCompId()

Part of the identifier of the inserted residue. This data item is a pointer to _pdbx_poly_seq_scheme.mon_id in the PDBX_POLY_SEQ_SCHEME category.

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

Part of the identifier of the inserted residue. This data item is a pointer to _pdbx_poly_seq_scheme.asym_id in the PDBX_POLY_SEQ_SCHEME category.

Returns:

StrColumn

getAuthAsymId

public StrColumn getAuthAsymId()

Part of the author identifier of the inserted residue. This data item is a pointer to _pdbx_poly_seq_scheme.pdb_strand_id in the PDBX_POLY_SEQ_SCHEME category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

Part of the author identifier of the inserted residue. This data item is a pointer to _pdbx_poly_seq_scheme.auth_seq_num in the PDBX_POLY_SEQ_SCHEME category.

Returns:

StrColumn

getSeqId

public IntColumn getSeqId()

Part of the author identifier of the inserted residue. This data item is a pointer to _pdbx_poly_seq_scheme.seq_id in the PDBX_POLY_SEQ_SCHEME category.

Returns:

IntColumn

getPDBInsCode

public StrColumn getPDBInsCode()

Part of the author identifier of the inserted residue. This data item is a pointer to _pdbx_poly_seq_scheme.pdb_ins_code in the PDBX_POLY_SEQ_SCHEME category.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

A description of any special aspects of the insertion

Returns:

StrColumn

getDbCode

public StrColumn getDbCode()

The code for this entity or biological unit or for a closely related entity or biological unit in the named database.

Returns:

StrColumn

getDbName

public StrColumn getDbName()

The name of the database containing reference information about this entity or biological unit.

Returns:

StrColumn