Package org.rcsb.cif.model.generated

Class PdbxStructRefSeqFeature

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStructRefSeqFeature

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructRefSeqFeature
extends BaseCategory

Data items in the PDBX_STRUCT_REF_SEQ_FEATURE category provide a mechanism for identifying and annotating sequence features.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStructRefSeqFeature(String name)
PdbxStructRefSeqFeature(String name, int rowCount, Object[] encodedColumns)
PdbxStructRefSeqFeature(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAlignId()	This data item is a pointer to _struct_ref_seq.align_id in the STRUCT_REF_SEQ category.
StrColumn	getAsymId()	Instance identifier for the polymer molecule.
StrColumn	getBegAuthMonId()	Monomer ID at the initial position in the PDB sequence segment.
StrColumn	getBegAuthSeqId()	Initial position in the PDB sequence segment.
StrColumn	getBegPdbInsCode()	Initial insertion code of the PDB sequence segment.
StrColumn	getBegSeqNum()	Initial position in the sequence segment.
StrColumn	getDetails()	A description of special aspects of the feature
StrColumn	getEndAuthMonId()	Monomer ID at the terminal position in the PDB sequence segment
StrColumn	getEndAuthSeqId()	Ending position in the PDB sequence segment
StrColumn	getEndPdbInsCode()	Terminal insertion code of the PDB sequence segment.
StrColumn	getEndSeqNum()	Ending position in the sequence segment
IntColumn	getFeatureId()	Uniquely identfies a sequence feature in the STRUCT_REF_SEQ_FEATURE category.
StrColumn	getPdbStrandId()	PDB strand/chain id.
StrColumn	getType()	A classification of the feature

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStructRefSeqFeature

public PdbxStructRefSeqFeature(String name,
                               Map<String,Column> columns)

PdbxStructRefSeqFeature

public PdbxStructRefSeqFeature(String name,
                               int rowCount,
                               Object[] encodedColumns)

PdbxStructRefSeqFeature

public PdbxStructRefSeqFeature(String name)

Method Detail

getFeatureId

public IntColumn getFeatureId()

Uniquely identfies a sequence feature in the STRUCT_REF_SEQ_FEATURE category.

Returns:

IntColumn

getAlignId

public StrColumn getAlignId()

This data item is a pointer to _struct_ref_seq.align_id in the STRUCT_REF_SEQ category.

Returns:

StrColumn

getType

public StrColumn getType()

A classification of the feature

Returns:

StrColumn

getDetails

public StrColumn getDetails()

A description of special aspects of the feature

Returns:

StrColumn

getPdbStrandId

public StrColumn getPdbStrandId()

PDB strand/chain id.

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

Instance identifier for the polymer molecule.

Returns:

StrColumn

getBegAuthSeqId

public StrColumn getBegAuthSeqId()

Initial position in the PDB sequence segment.

Returns:

StrColumn

getEndAuthSeqId

public StrColumn getEndAuthSeqId()

Ending position in the PDB sequence segment

Returns:

StrColumn

getBegSeqNum

public StrColumn getBegSeqNum()

Initial position in the sequence segment.

Returns:

StrColumn

getEndSeqNum

public StrColumn getEndSeqNum()

Ending position in the sequence segment

Returns:

StrColumn

getBegAuthMonId

public StrColumn getBegAuthMonId()

Monomer ID at the initial position in the PDB sequence segment.

Returns:

StrColumn

getEndAuthMonId

public StrColumn getEndAuthMonId()

Monomer ID at the terminal position in the PDB sequence segment

Returns:

StrColumn

getBegPdbInsCode

public StrColumn getBegPdbInsCode()

Initial insertion code of the PDB sequence segment.

Returns:

StrColumn

getEndPdbInsCode

public StrColumn getEndPdbInsCode()

Terminal insertion code of the PDB sequence segment.

Returns:

StrColumn