Package org.rcsb.cif.model.generated

Class PdbxStructRefSeqDifDepositorInfo

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStructRefSeqDifDepositorInfo

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructRefSeqDifDepositorInfo
extends BaseCategory

Data items in the PDBX_STRUCT_REF_SEQ_DIF_DEPOSITOR_INFO category capture depositor provided information related to the archival cateogory STRUCT_REF_SEQ_DIF.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStructRefSeqDifDepositorInfo(String name)
PdbxStructRefSeqDifDepositorInfo(String name, int rowCount, Object[] encodedColumns)
PdbxStructRefSeqDifDepositorInfo(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAnnotation()	The description of the sequence difference.
StrColumn	getAuthMonId()	The monomer type found at this position in the sequence of the entity or biological unit provided by the depositor.
IntColumn	getAuthSeqId()	The monomer position in the author provided sequence.
StrColumn	getDbAccession()	Accession code of the reference database.
StrColumn	getDbCode()	The code for this entity or biological unit or for a closely related entity or biological unit in the named database.
StrColumn	getDbMonId()	The monomer type found at this position in the referenced database entry.
StrColumn	getDbName()	The name of the database containing reference information about this entity or biological unit.
IntColumn	getDbSeqId()	The monomer position in the referenced database entry.
StrColumn	getDetails()	A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the referenced database entry.
StrColumn	getEntityId()	This data item is a pointer to _entity.id in the ENTITY category.
IntColumn	getOrdinal()	Ordinal index for this category.
StrColumn	getRefId()	This data item is a pointer to _struct_ref_seq.ref_id in the STRUCT_REF_SEQ_DEPOSITOR_INFO category.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStructRefSeqDifDepositorInfo

public PdbxStructRefSeqDifDepositorInfo(String name,
                                        Map<String,Column> columns)

PdbxStructRefSeqDifDepositorInfo

public PdbxStructRefSeqDifDepositorInfo(String name,
                                        int rowCount,
                                        Object[] encodedColumns)

PdbxStructRefSeqDifDepositorInfo

public PdbxStructRefSeqDifDepositorInfo(String name)

Method Detail

getOrdinal

public IntColumn getOrdinal()

Ordinal index for this category.

Returns:

IntColumn

getRefId

public StrColumn getRefId()

This data item is a pointer to _struct_ref_seq.ref_id in the STRUCT_REF_SEQ_DEPOSITOR_INFO category.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getDbMonId

public StrColumn getDbMonId()

The monomer type found at this position in the referenced database entry. This data item is a pointer to _chem_comp.id in the CHEM_COMP category.

Returns:

StrColumn

getDbSeqId

public IntColumn getDbSeqId()

The monomer position in the referenced database entry.

Returns:

IntColumn

getDetails

public StrColumn getDetails()

A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the referenced database entry.

Returns:

StrColumn

getAuthMonId

public StrColumn getAuthMonId()

The monomer type found at this position in the sequence of the entity or biological unit provided by the depositor.

Returns:

StrColumn

getAuthSeqId

public IntColumn getAuthSeqId()

The monomer position in the author provided sequence.

Returns:

IntColumn

getDbAccession

public StrColumn getDbAccession()

Accession code of the reference database.

Returns:

StrColumn

getDbCode

public StrColumn getDbCode()

The code for this entity or biological unit or for a closely related entity or biological unit in the named database.

Returns:

StrColumn

getDbName

public StrColumn getDbName()

The name of the database containing reference information about this entity or biological unit.

Returns:

StrColumn

getAnnotation

public StrColumn getAnnotation()

The description of the sequence difference.

Returns:

StrColumn