Package org.rcsb.cif.model.generated

Class PdbxStructRefSeqDepositorInfo

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStructRefSeqDepositorInfo

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructRefSeqDepositorInfo
extends BaseCategory

Data items in the PDBX_STRUCT_REF_SEQ_DEPOSITOR_INFO category capture depositor provided information related to the archival cateogory STRUCT_REF_SEQ.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStructRefSeqDepositorInfo(String name)
PdbxStructRefSeqDepositorInfo(String name, int rowCount, Object[] encodedColumns)
PdbxStructRefSeqDepositorInfo(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getDbAccession()	Accession code of the reference database.
IntColumn	getDbAlignBeg()	The sequence position in the referenced database entry at which the alignment begins.
IntColumn	getDbAlignEnd()	The sequence position in the referenced database entry at which the alignment ends.
StrColumn	getDbCode()	The code for this entity or biological unit or for a closely related entity or biological unit in the named database.
StrColumn	getDbName()	The name of the database containing reference information about this entity or biological unit.
StrColumn	getDbSeqOneLetterCode()	Database chemical sequence expressed as string of one-letter residue codes.
StrColumn	getDetails()	A description of special aspects of the sequence alignment.
StrColumn	getEntityId()	This data item is a pointer to _entity.id in the ENTITY category.
StrColumn	getRefId()	This data item is a unique identifier for reference sequence information.
StrColumn	getSeqAlignBegin()	Beginning index in the author provided chemical sequence.
StrColumn	getSeqAlignEnd()	Ending index in the author provided chemical sequence.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStructRefSeqDepositorInfo

public PdbxStructRefSeqDepositorInfo(String name,
                                     Map<String,Column> columns)

PdbxStructRefSeqDepositorInfo

public PdbxStructRefSeqDepositorInfo(String name,
                                     int rowCount,
                                     Object[] encodedColumns)

PdbxStructRefSeqDepositorInfo

public PdbxStructRefSeqDepositorInfo(String name)

Method Detail

getRefId

public StrColumn getRefId()

This data item is a unique identifier for reference sequence information.

Returns:

StrColumn

getEntityId

public StrColumn getEntityId()

This data item is a pointer to _entity.id in the ENTITY category.

Returns:

StrColumn

getDbAlignBeg

public IntColumn getDbAlignBeg()

The sequence position in the referenced database entry at which the alignment begins.

Returns:

IntColumn

getDbAlignEnd

public IntColumn getDbAlignEnd()

The sequence position in the referenced database entry at which the alignment ends.

Returns:

IntColumn

getDetails

public StrColumn getDetails()

A description of special aspects of the sequence alignment.

Returns:

StrColumn

getDbAccession

public StrColumn getDbAccession()

Accession code of the reference database.

Returns:

StrColumn

getDbCode

public StrColumn getDbCode()

The code for this entity or biological unit or for a closely related entity or biological unit in the named database.

Returns:

StrColumn

getDbName

public StrColumn getDbName()

The name of the database containing reference information about this entity or biological unit.

Returns:

StrColumn

getDbSeqOneLetterCode

public StrColumn getDbSeqOneLetterCode()

Database chemical sequence expressed as string of one-letter residue codes.

Returns:

StrColumn

getSeqAlignBegin

public StrColumn getSeqAlignBegin()

Beginning index in the author provided chemical sequence.

Returns:

StrColumn

getSeqAlignEnd

public StrColumn getSeqAlignEnd()

Ending index in the author provided chemical sequence.

Returns:

StrColumn