Package org.rcsb.cif.model.generated

Class PdbxStructRefSeqDeletion

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStructRefSeqDeletion

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructRefSeqDeletion
extends BaseCategory

Data items in the PDBX_STRUCT_REF_SEQ_INSERTION category annotate deletions in the sequence of the entity described in the referenced database entry.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStructRefSeqDeletion(String name)
PdbxStructRefSeqDeletion(String name, int rowCount, Object[] encodedColumns)
PdbxStructRefSeqDeletion(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAsymId()	Identifies the polymer entity instance in this entry corresponding to the reference sequence in which the deletion is specified.
StrColumn	getCompId()	The monomer name found at this position in the referenced database entry.
StrColumn	getDbCode()	The code for this entity or biological unit or for a closely related entity or biological unit in the named database.
StrColumn	getDbName()	The name of the database containing reference information about this entity or biological unit.
IntColumn	getDbSeqId()	This data item is the database sequence numbering of the deleted residue
StrColumn	getDetails()	A description of any special aspects of the deletion
StrColumn	getId()	The value of _pdbx_struct_ref_seq_deletion.id must uniquely identify a record in the PDBX_STRUCT_REF_SEQ_DELETION list.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStructRefSeqDeletion

public PdbxStructRefSeqDeletion(String name,
                                Map<String,Column> columns)

PdbxStructRefSeqDeletion

public PdbxStructRefSeqDeletion(String name,
                                int rowCount,
                                Object[] encodedColumns)

PdbxStructRefSeqDeletion

public PdbxStructRefSeqDeletion(String name)

Method Detail

getId

public StrColumn getId()

The value of _pdbx_struct_ref_seq_deletion.id must uniquely identify a record in the PDBX_STRUCT_REF_SEQ_DELETION list.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

A description of any special aspects of the deletion

Returns:

StrColumn

getAsymId

public StrColumn getAsymId()

Identifies the polymer entity instance in this entry corresponding to the reference sequence in which the deletion is specified. This data item is a pointer to _pdbx_poly_seq_scheme.asym_id in the PDBX_POLY_SEQ_SCHEME category.

Returns:

StrColumn

getCompId

public StrColumn getCompId()

The monomer name found at this position in the referenced database entry.

Returns:

StrColumn

getDbSeqId

public IntColumn getDbSeqId()

This data item is the database sequence numbering of the deleted residue

Returns:

IntColumn

getDbCode

public StrColumn getDbCode()

The code for this entity or biological unit or for a closely related entity or biological unit in the named database.

Returns:

StrColumn

getDbName

public StrColumn getDbName()

The name of the database containing reference information about this entity or biological unit.

Returns:

StrColumn