Package org.rcsb.cif.model.generated

Class PdbxStructModResidue

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStructModResidue

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructModResidue
extends BaseCategory

Data items in the PDBX_STRUCT_MOD_RESIDUE category list the modified polymer components in the entry and provide some details describing the nature of the modification.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStructModResidue(String name)
PdbxStructModResidue(String name, int rowCount, Object[] encodedColumns)
PdbxStructModResidue(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	Part of the identifier for the modified polymer component.
StrColumn	getAuthCompId()	Part of the identifier for the modified polymer component.
IntColumn	getAuthSeqId()	Part of the identifier for the modified polymer component.
StrColumn	getDetails()	Details of the modification for this polymer component.
IntColumn	getId()	The value of _pdbx_struct_mod_residue.id must uniquely identify each item in the PDBX_STRUCT_MOD_RESIDUE list.
StrColumn	getLabelAsymId()	Part of the identifier for the modified polymer component.
StrColumn	getLabelCompId()	Part of the identifier for the modified polymer component.
IntColumn	getLabelSeqId()	Part of the identifier for the unobserved or zero occupancy residue.
StrColumn	getParentCompId()	The parent component identifier for this modified polymer component.
StrColumn	getPDBInsCode()	Part of the identifier for the modified polymer component.
IntColumn	getPDBModelNum()	Part of the identifier for the modified polymer component.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStructModResidue

public PdbxStructModResidue(String name,
                            Map<String,Column> columns)

PdbxStructModResidue

public PdbxStructModResidue(String name,
                            int rowCount,
                            Object[] encodedColumns)

PdbxStructModResidue

public PdbxStructModResidue(String name)

Method Detail

getId

public IntColumn getId()

The value of _pdbx_struct_mod_residue.id must uniquely identify each item in the PDBX_STRUCT_MOD_RESIDUE list. This is an integer serial number.

Returns:

IntColumn

getPDBModelNum

public IntColumn getPDBModelNum()

Part of the identifier for the modified polymer component. This data item is a pointer to _atom_site.pdbx_PDB_model_num in the ATOM_SITE category.

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

Part of the identifier for the modified polymer component. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthCompId

public StrColumn getAuthCompId()

Part of the identifier for the modified polymer component. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public IntColumn getAuthSeqId()

Part of the identifier for the modified polymer component. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getPDBInsCode

public StrColumn getPDBInsCode()

Part of the identifier for the modified polymer component. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.

Returns:

StrColumn

getLabelAsymId

public StrColumn getLabelAsymId()

Part of the identifier for the modified polymer component. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelCompId

public StrColumn getLabelCompId()

Part of the identifier for the modified polymer component. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelSeqId

public IntColumn getLabelSeqId()

Part of the identifier for the unobserved or zero occupancy residue. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getParentCompId

public StrColumn getParentCompId()

The parent component identifier for this modified polymer component.

Returns:

StrColumn

getDetails

public StrColumn getDetails()

Details of the modification for this polymer component.

Returns:

StrColumn