Package org.rcsb.cif.model.generated

Class PdbxStructLink

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructLink
extends BaseCategory
    Data items in the PDBX_STRUCT_LINK category record details about covalent linkages in the structure.

    • Constructor Detail

      • PdbxStructLink

        public PdbxStructLink​(String name,
                      int rowCount,
                      Object[] encodedColumns)

      • PdbxStructLink

        public PdbxStructLink​(String name)

    • Method Detail

      • getId

        public StrColumn getId()
        The value of _pdbx_struct_link.id must uniquely identify a record in the PDBX_STRUCT_LINK list.
        Returns:
        StrColumn

      • getType

        public StrColumn getType()
        The chemical or structural type of the interaction.
        Returns:
        StrColumn

      • getPtnr1LabelAltId

        public StrColumn getPtnr1LabelAltId()
        A component of the identifier for partner 1 of the structure connection.
        Returns:
        StrColumn

      • getPtnr1LabelAsymId

        public StrColumn getPtnr1LabelAsymId()
        A component of the identifier for partner 1 of the structure connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getPtnr1LabelAtomId

        public StrColumn getPtnr1LabelAtomId()
        A component of the identifier for partner 1 of the structure connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
        Returns:
        StrColumn

      • getPtnr1LabelCompId

        public StrColumn getPtnr1LabelCompId()
        A component of the identifier for partner 1 of the structure connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getPtnr1LabelSeqId

        public IntColumn getPtnr1LabelSeqId()
        A component of the identifier for partner 1 of the structure connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getPtnr1LabelInsCode

        public StrColumn getPtnr1LabelInsCode()
        A component of the identifier for partner 1 of the structure connection.
        Returns:
        StrColumn

      • getPtnr1Symmetry

        public StrColumn getPtnr1Symmetry()
        Describes the symmetry operation that should be applied to the atom set specified by _pdbx_struct_link.ptnr1_label* to generate the first partner in the structure connection.
        Returns:
        StrColumn

      • getPtnr2LabelAltId

        public StrColumn getPtnr2LabelAltId()
        A component of the identifier for partner 2 of the structure connection. This data item is a pointer to _atom_sites_alt.id in the ATOM_SITES_ALT category.
        Returns:
        StrColumn

      • getPtnr2LabelAsymId

        public StrColumn getPtnr2LabelAsymId()
        A component of the identifier for partner 2 of the structure connection. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getPtnr2LabelAtomId

        public StrColumn getPtnr2LabelAtomId()
        A component of the identifier for partner 2 of the structure connection. This data item is a pointer to _chem_comp_atom.atom_id in the CHEM_COMP_ATOM category.
        Returns:
        StrColumn

      • getPtnr2LabelCompId

        public StrColumn getPtnr2LabelCompId()
        A component of the identifier for partner 2 of the structure connection. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
        Returns:
        StrColumn

      • getPtnr2LabelSeqId

        public IntColumn getPtnr2LabelSeqId()
        A component of the identifier for partner 2 of the structure connection. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
        Returns:
        IntColumn

      • getPtnr2LabelInsCode

        public StrColumn getPtnr2LabelInsCode()
        A component of the identifier for partner 2 of the structure connection.
        Returns:
        StrColumn

      • getPtnr2Symmetry

        public StrColumn getPtnr2Symmetry()
        Describes the symmetry operation that should be applied to the atom set specified by _pdbx_struct_link.ptnr2_label* to generate the second partner in the structure connection.
        Returns:
        StrColumn

      • getDetails

        public StrColumn getDetails()
        Text description of the linkage.
        Returns:
        StrColumn

      • getPdbxDistValue

        public FloatColumn getPdbxDistValue()
        The linkage distance in angstroms.
        Returns:
        FloatColumn