Package org.rcsb.cif.model.generated

Class PdbxStructAssemblyGenDepositorInfo

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStructAssemblyGenDepositorInfo

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructAssemblyGenDepositorInfo
extends BaseCategory

Data items in the PDBX_STRUCT_ASSEMBLY_GEN_DEPOSITOR_INFO category capture depositor provided information related to the archival cateogory PDBX_STRUCT_ASSEMBLY_GEN.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStructAssemblyGenDepositorInfo(String name)
PdbxStructAssemblyGenDepositorInfo(String name, int rowCount, Object[] encodedColumns)
PdbxStructAssemblyGenDepositorInfo(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAllChains()	Flag indicating that all polymer chains are used in the assembly
StrColumn	getAssemblyId()	This data item is a pointer to _pdbx_struct_assembly.id in the PDBX_STRUCT_ASSEMBLY category.
StrColumn	getAsymIdList()	This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
StrColumn	getAtUnitMatrix()	Flag indicating unit matrix
StrColumn	getChainIdList()	This data item is the author provided chain names for the assembly This item may be expressed as a comma separated list of identifiers.
StrColumn	getFullMatrices()	Transformation matrix as provided by depositor
FloatColumn	getHelicalRise()	The axial rise per subunit in the helical assembly.
FloatColumn	getHelicalRotation()	Angular rotation (degrees) along the helical axis
StrColumn	getId()	The value of _pdbx_struct_assembly_gen_depositor_info.id must uniquely identify a record in the PDBX_STRUCT_ASSEMBLY_GEN_DEPOSITOR_INFO list.
StrColumn	getOperExpression()	Identifies the operation of collection of operations from category PDBX_STRUCT_OPER_LIST.
StrColumn	getSymmetryOperation()	This item expresses the transformation on an X, Y and Z basis.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStructAssemblyGenDepositorInfo

public PdbxStructAssemblyGenDepositorInfo(String name,
                                          Map<String,Column> columns)

PdbxStructAssemblyGenDepositorInfo

public PdbxStructAssemblyGenDepositorInfo(String name,
                                          int rowCount,
                                          Object[] encodedColumns)

PdbxStructAssemblyGenDepositorInfo

public PdbxStructAssemblyGenDepositorInfo(String name)

Method Detail

getId

public StrColumn getId()

The value of _pdbx_struct_assembly_gen_depositor_info.id must uniquely identify a record in the PDBX_STRUCT_ASSEMBLY_GEN_DEPOSITOR_INFO list.

Returns:

StrColumn

getAsymIdList

public StrColumn getAsymIdList()

This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category. This item may be expressed as a comma separated list of identifiers.

Returns:

StrColumn

getAssemblyId

public StrColumn getAssemblyId()

This data item is a pointer to _pdbx_struct_assembly.id in the PDBX_STRUCT_ASSEMBLY category.

Returns:

StrColumn

getOperExpression

public StrColumn getOperExpression()

Identifies the operation of collection of operations from category PDBX_STRUCT_OPER_LIST. Operation expressions may have the forms: (1) the single operation 1 (1,2,5) the operations 1, 2, 5 (1-4) the operations 1,2,3 and 4 (1,2)(3,4) the combinations of operations 3 and 4 followed by 1 and 2 (i.e. the cartesian product of parenthetical groups applied from right to left)

Returns:

StrColumn

getFullMatrices

public StrColumn getFullMatrices()

Transformation matrix as provided by depositor

Returns:

StrColumn

getSymmetryOperation

public StrColumn getSymmetryOperation()

This item expresses the transformation on an X, Y and Z basis.

Returns:

StrColumn

getAtUnitMatrix

public StrColumn getAtUnitMatrix()

Flag indicating unit matrix

Returns:

StrColumn

getChainIdList

public StrColumn getChainIdList()

This data item is the author provided chain names for the assembly This item may be expressed as a comma separated list of identifiers.

Returns:

StrColumn

getAllChains

public StrColumn getAllChains()

Flag indicating that all polymer chains are used in the assembly

Returns:

StrColumn

getHelicalRotation

public FloatColumn getHelicalRotation()

Angular rotation (degrees) along the helical axis

Returns:

FloatColumn

getHelicalRise

public FloatColumn getHelicalRise()

The axial rise per subunit in the helical assembly.

Returns:

FloatColumn