Package org.rcsb.cif.model.generated

Class PdbxStructAssemblyGen

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStructAssemblyGen

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStructAssemblyGen
extends BaseCategory

Data items in the PDBX_STRUCT_ASSEMBLY_GEN category record details about the generation of each macromolecular assemblies. The PDBX_STRUCT_ASSEMBLY_GEN data items provide the specifications of the components that constitute that assembly in terms of cartesian transformations.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStructAssemblyGen(String name)
PdbxStructAssemblyGen(String name, int rowCount, Object[] encodedColumns)
PdbxStructAssemblyGen(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAssemblyId()	This data item is a pointer to _pdbx_struct_assembly.id in the PDBX_STRUCT_ASSEMBLY category.
StrColumn	getAsymIdList()	This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
StrColumn	getAuthAsymIdList()	This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
StrColumn	getEntityInstId()	This data item is a pointer to _pdbx_struct_entity_inst.id in the PDBX_STRUCT_ENTITY_INST category.
StrColumn	getOperExpression()	Identifies the operation of collection of operations from category PDBX_STRUCT_OPER_LIST.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStructAssemblyGen

public PdbxStructAssemblyGen(String name,
                             Map<String,Column> columns)

PdbxStructAssemblyGen

public PdbxStructAssemblyGen(String name,
                             int rowCount,
                             Object[] encodedColumns)

PdbxStructAssemblyGen

public PdbxStructAssemblyGen(String name)

Method Detail

getEntityInstId

public StrColumn getEntityInstId()

This data item is a pointer to _pdbx_struct_entity_inst.id in the PDBX_STRUCT_ENTITY_INST category. This item may be expressed as a comma separated list of instance identifiers.

Returns:

StrColumn

getAsymIdList

public StrColumn getAsymIdList()

This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category. This item may be expressed as a comma separated list of identifiers.

Returns:

StrColumn

getAuthAsymIdList

public StrColumn getAuthAsymIdList()

This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category. This item may be expressed as a comma separated list of identifiers.

Returns:

StrColumn

getAssemblyId

public StrColumn getAssemblyId()

This data item is a pointer to _pdbx_struct_assembly.id in the PDBX_STRUCT_ASSEMBLY category.

Returns:

StrColumn

getOperExpression

public StrColumn getOperExpression()

Identifies the operation of collection of operations from category PDBX_STRUCT_OPER_LIST. Operation expressions may have the forms: (1) the single operation 1 (1,2,5) the operations 1, 2, 5 (1-4) the operations 1,2,3 and 4 (1,2)(3,4) the combinations of operations 3 and 4 followed by 1 and 2 (i.e. the cartesian product of parenthetical groups applied from right to left)

Returns:

StrColumn