Package org.rcsb.cif.model.generated

Class PdbxStereochemistry

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxStereochemistry

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxStereochemistry
extends BaseCategory

Data items in the PDBX_STEREOCHEMISTRY identify chiral centers and associated chiral volumes.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxStereochemistry(String name)
PdbxStereochemistry(String name, int rowCount, Object[] encodedColumns)
PdbxStereochemistry(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
FloatColumn	getAngleOutOfPlane()	Out-of-plane angle for neighbor W
StrColumn	getAuthAsymId()	This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
StrColumn	getAuthSeqId()	This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
IntColumn	getId()	The value of _pdbx_stereochemistry.id must uniquely identify each item in the PDBX_STEREOCHEMISTRY list.
StrColumn	getLabelAltId()	This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
StrColumn	getLabelAltIdU()	Alt_id for stereochemically related atom U.
StrColumn	getLabelAltIdV()	Alt_id for stereochemically related atom V.
StrColumn	getLabelAltIdW()	Alt_id for stereochemically related atom W.
StrColumn	getLabelAsymId()	This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
StrColumn	getLabelAtomId()	This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
StrColumn	getLabelAtomIdU()	Stereochemically related atom U.
StrColumn	getLabelAtomIdV()	Stereochemically related atom V.
StrColumn	getLabelAtomIdW()	Stereochemically related atom W.
StrColumn	getLabelCompId()	This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
IntColumn	getLabelSeqId()	This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
IntColumn	getModelId()	The model number for the given angle
FloatColumn	getVolume3()	Chiral volume in degrees.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxStereochemistry

public PdbxStereochemistry(String name,
                           Map<String,Column> columns)

PdbxStereochemistry

public PdbxStereochemistry(String name,
                           int rowCount,
                           Object[] encodedColumns)

PdbxStereochemistry

public PdbxStereochemistry(String name)

Method Detail

getId

public IntColumn getId()

The value of _pdbx_stereochemistry.id must uniquely identify each item in the PDBX_STEREOCHEMISTRY list. This is an integer serial number.

Returns:

IntColumn

getModelId

public IntColumn getModelId()

The model number for the given angle

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAsymId

public StrColumn getLabelAsymId()

This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelCompId

public StrColumn getLabelCompId()

This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelSeqId

public IntColumn getLabelSeqId()

This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getLabelAtomId

public StrColumn getLabelAtomId()

This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAltId

public StrColumn getLabelAltId()

This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAtomIdU

public StrColumn getLabelAtomIdU()

Stereochemically related atom U. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAltIdU

public StrColumn getLabelAltIdU()

Alt_id for stereochemically related atom U. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAtomIdV

public StrColumn getLabelAtomIdV()

Stereochemically related atom V. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAltIdV

public StrColumn getLabelAltIdV()

Alt_id for stereochemically related atom V. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAtomIdW

public StrColumn getLabelAtomIdW()

Stereochemically related atom W. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAltIdW

public StrColumn getLabelAltIdW()

Alt_id for stereochemically related atom W. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.

Returns:

StrColumn

getVolume3

public FloatColumn getVolume3()

Chiral volume in degrees. (U x V) * W

Returns:

FloatColumn

getAngleOutOfPlane

public FloatColumn getAngleOutOfPlane()

Out-of-plane angle for neighbor W

Returns:

FloatColumn