Package org.rcsb.cif.model.generated

Class PdbxSequenceRange

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxSequenceRange

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxSequenceRange
extends BaseCategory

Data items in the PDBX_SEQUENCE_RANGE category identify the beginning and ending points of polypeptide sequence segments.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxSequenceRange(String name)
PdbxSequenceRange(String name, int rowCount, Object[] encodedColumns)
PdbxSequenceRange(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getBegAuthAsymId()	A component of the identifier for the monomer at which this segment of the sequence range begins.
StrColumn	getBegAuthCompId()	A component of the identifier for the monomer at which this segment of the sequence range begins.
StrColumn	getBegAuthSeqId()	A component of the identifier for the monomer at which this segment of the sequence range begins.
StrColumn	getBegLabelAltId()	A component of the identifier for the monomer at which this segment of the sequence range begins.
StrColumn	getBegLabelAsymId()	A component of the identifier for the monomer at which this segment of the sequence range begins.
StrColumn	getBegLabelCompId()	A component of the identifier for the monomer at which this segment of the sequence range begins.
IntColumn	getBegLabelSeqId()	A component of the identifier for the monomer at which this segment of the sequence range begins.
StrColumn	getEndAuthAsymId()	A component of the identifier for the monomer at which this segment of the sequence range ends.
StrColumn	getEndAuthCompId()	A component of the identifier for the monomer at which this segment of the sequence range ends.
StrColumn	getEndAuthSeqId()	A component of the identifier for the monomer at which this segment of the sequence range ends.
StrColumn	getEndLabelAltId()	A component of the identifier for the monomer at which this segment of the sequence range ends.
StrColumn	getEndLabelAsymId()	A component of the identifier for the monomer at which this segment of the sequence range ends.
StrColumn	getEndLabelCompId()	A component of the identifier for the monomer at which this segment of the sequence range ends.
IntColumn	getEndLabelSeqId()	A component of the identifier for the monomer at which this segment of the sequence range ends.
StrColumn	getSeqRangeId()	This data item is an identifier for a sequence range.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxSequenceRange

public PdbxSequenceRange(String name,
                         Map<String,Column> columns)

PdbxSequenceRange

public PdbxSequenceRange(String name,
                         int rowCount,
                         Object[] encodedColumns)

PdbxSequenceRange

public PdbxSequenceRange(String name)

Method Detail

getBegLabelAltId

public StrColumn getBegLabelAltId()

A component of the identifier for the monomer at which this segment of the sequence range begins. This data item is a pointer to _atom_sites_alt.id in the ATOM_SITES_ALT category.

Returns:

StrColumn

getBegLabelAsymId

public StrColumn getBegLabelAsymId()

A component of the identifier for the monomer at which this segment of the sequence range begins. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getBegLabelCompId

public StrColumn getBegLabelCompId()

A component of the identifier for the monomer at which this segment of the sequence range begins. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getBegLabelSeqId

public IntColumn getBegLabelSeqId()

A component of the identifier for the monomer at which this segment of the sequence range begins. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getBegAuthAsymId

public StrColumn getBegAuthAsymId()

A component of the identifier for the monomer at which this segment of the sequence range begins. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getBegAuthCompId

public StrColumn getBegAuthCompId()

A component of the identifier for the monomer at which this segment of the sequence range begins. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getBegAuthSeqId

public StrColumn getBegAuthSeqId()

A component of the identifier for the monomer at which this segment of the sequence range begins. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getSeqRangeId

public StrColumn getSeqRangeId()

This data item is an identifier for a sequence range.

Returns:

StrColumn

getEndLabelAltId

public StrColumn getEndLabelAltId()

A component of the identifier for the monomer at which this segment of the sequence range ends. This data item is a pointer to _atom_sites_alt.id in the ATOM_SITES_ALT category.

Returns:

StrColumn

getEndLabelAsymId

public StrColumn getEndLabelAsymId()

A component of the identifier for the monomer at which this segment of the sequence range ends. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getEndLabelCompId

public StrColumn getEndLabelCompId()

A component of the identifier for the monomer at which this segment of the sequence range ends. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getEndLabelSeqId

public IntColumn getEndLabelSeqId()

A component of the identifier for the monomer at which this segment of the sequence range ends. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getEndAuthAsymId

public StrColumn getEndAuthAsymId()

A component of the identifier for the monomer at which this segment of the sequence range ends. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getEndAuthCompId

public StrColumn getEndAuthCompId()

A component of the identifier for the monomer at which this segment of the sequence range ends. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getEndAuthSeqId

public StrColumn getEndAuthSeqId()

A component of the identifier for the monomer at which this segment of the sequence range ends. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn