Package org.rcsb.cif.model.generated

Class PdbxSequencePattern

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxSequencePattern

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxSequencePattern
extends BaseCategory

Data items in the PDBX_SEQUENCE_PATTERN category record the number of occurences of common step sequence patterns (e.g. AA, CG, AT).

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxSequencePattern(String name)
PdbxSequencePattern(String name, int rowCount, Object[] encodedColumns)
PdbxSequencePattern(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	The identifier of the author asym_id of the strand containing the sequence pattern.
StrColumn	getLabelAsymId()	The identifier of the asym_id of the strand containing the sequence pattern.
IntColumn	getPatternCount()	Number of occurences of the sequence pattern within the named strand.
StrColumn	getSequencePattern()	Sequence singlet or doublet.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxSequencePattern

public PdbxSequencePattern(String name,
                           Map<String,Column> columns)

PdbxSequencePattern

public PdbxSequencePattern(String name,
                           int rowCount,
                           Object[] encodedColumns)

PdbxSequencePattern

public PdbxSequencePattern(String name)

Method Detail

getLabelAsymId

public StrColumn getLabelAsymId()

The identifier of the asym_id of the strand containing the sequence pattern. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthAsymId

public StrColumn getAuthAsymId()

The identifier of the author asym_id of the strand containing the sequence pattern. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getPatternCount

public IntColumn getPatternCount()

Number of occurences of the sequence pattern within the named strand.

Returns:

IntColumn

getSequencePattern

public StrColumn getSequencePattern()

Sequence singlet or doublet.

Returns:

StrColumn