Package org.rcsb.cif.model.generated

Class PdbxRmsDevsCovalent

  • All Implemented Interfaces:
    Category
    @Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxRmsDevsCovalent
extends BaseCategory
    Data items in the PDBX_RMS_DEVS_COVALENT record the summary RMS deviations for nucleic acid covalent geometry relative to small molecule crystal standards.

    • Constructor Detail

      • PdbxRmsDevsCovalent

        public PdbxRmsDevsCovalent​(String name,
                           int rowCount,
                           Object[] encodedColumns)

      • PdbxRmsDevsCovalent

        public PdbxRmsDevsCovalent​(String name)

    • Method Detail

      • getEntryId

        public StrColumn getEntryId()
        Pointer to the entry id.
        Returns:
        StrColumn

      • getRmsBonds

        public FloatColumn getRmsBonds()
        Total RMS deviation for all bonds in entry relative to small molecule crystal standards.
        Returns:
        FloatColumn

      • getNumBonds

        public IntColumn getNumBonds()
        Total number of bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds.
        Returns:
        IntColumn

      • getRmsBondsBase

        public FloatColumn getRmsBondsBase()
        Total RMS deviation for all base bonds in entry relative to small molecule crystal standards.
        Returns:
        FloatColumn

      • getNumBondsBase

        public IntColumn getNumBondsBase()
        Total number of base bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_base.
        Returns:
        IntColumn

      • getRmsBondsSugar

        public FloatColumn getRmsBondsSugar()
        Total RMS deviation for all sugar bonds in entry relative to small molecule crystal standards.
        Returns:
        FloatColumn

      • getNumBondsSugar

        public IntColumn getNumBondsSugar()
        Total number of sugar bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_sugar.
        Returns:
        IntColumn

      • getRmsBondsPhosphate

        public FloatColumn getRmsBondsPhosphate()
        Total RMS deviation for all phosphate bonds in entry relative to small molecule crystal standards.
        Returns:
        FloatColumn

      • getNumBondsPhosphate

        public IntColumn getNumBondsPhosphate()
        Total number of sugar bonds in calculation of _pdbx_rms_devs_covalent.rms_bonds_phosphate.
        Returns:
        IntColumn

      • getRmsAngles

        public FloatColumn getRmsAngles()
        Total RMS deviation for all angles in entry relative to small molecule crystal standards.
        Returns:
        FloatColumn

      • getNumAngles

        public IntColumn getNumAngles()
        Total number of angles in calculation of _pdbx_rms_devs_covalent.rms_angles.
        Returns:
        IntColumn

      • getRmsAnglesBase

        public FloatColumn getRmsAnglesBase()
        Total RMS deviation for all base angles in entry relative to small molecule crystal standards.
        Returns:
        FloatColumn

      • getNumAnglesBase

        public IntColumn getNumAnglesBase()
        Total number of base angles in calculation of _pdbx_rms_devs_covalent.rms_angles_base.
        Returns:
        IntColumn

      • getRmsAnglesSugar

        public FloatColumn getRmsAnglesSugar()
        Total RMS deviation for all sugar angles in entry relative to small molecule crystal standards.
        Returns:
        FloatColumn

      • getNumAnglesSugar

        public IntColumn getNumAnglesSugar()
        Total number of sugar angles in calculation of _pdbx_rms_devs_covalent.rms_angles_sugar.
        Returns:
        IntColumn

      • getRmsAnglesPhosphate

        public FloatColumn getRmsAnglesPhosphate()
        Total RMS deviation for all phosphate angles in entry relative to small molecule crystal standards.
        Returns:
        FloatColumn

      • getNumAnglesPhosphate

        public IntColumn getNumAnglesPhosphate()
        Total number of sugar angles in calculation of _pdbx_rms_devs_covalent.rms_angles_phosphate.
        Returns:
        IntColumn