Package org.rcsb.cif.model.generated

Class PdbxRmsDevsCovByMonomer

java.lang.Object

org.rcsb.cif.model.BaseCategory

org.rcsb.cif.model.generated.PdbxRmsDevsCovByMonomer

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxRmsDevsCovByMonomer
extends BaseCategory

Data items in the PDBX_RMS_DEVS_COV_BY_MONOMER record the RMS deviations covalent geometry for each momoner relative to small molecule crystal standards.

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

isText, textFields

Constructor Summary

Constructors

Constructor	Description
PdbxRmsDevsCovByMonomer(String name)
PdbxRmsDevsCovByMonomer(String name, int rowCount, Object[] encodedColumns)
PdbxRmsDevsCovByMonomer(String name, Map<String,Column> columns)

Method Summary

Modifier and Type	Method	Description
StrColumn	getAuthAsymId()	This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
StrColumn	getAuthSeqId()	This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
IntColumn	getId()	The value of _pdbx_rms_devs_cov_by_monomer.id must uniquely identify each item in the PDBX_RMS_DEVS_COV_BY_MONOMER list.
StrColumn	getLabelAsymId()	This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
StrColumn	getLabelCompId()	This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
IntColumn	getLabelSeqId()	This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
IntColumn	getModelId()	The model number
IntColumn	getNumAngles()	Total number of angles in calculation of _pdbx_rms_devs_cov_by_monomer.rms_angles.
IntColumn	getNumBonds()	Total number of bonds in calculation of _pdbx_rms_devs_cov_by_monomer.rms_bonds.
FloatColumn	getRmsAngles()	RMS deviation for all angles in this monomer relative to small molecule crystal standards.
FloatColumn	getRmsBonds()	RMS deviation for all bonds in this monomer relative to small molecule crystal standards.

Methods inherited from class org.rcsb.cif.model.BaseCategory

getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columnNames, columns, get

Constructor Detail

PdbxRmsDevsCovByMonomer

public PdbxRmsDevsCovByMonomer(String name,
                               Map<String,Column> columns)

PdbxRmsDevsCovByMonomer

public PdbxRmsDevsCovByMonomer(String name,
                               int rowCount,
                               Object[] encodedColumns)

PdbxRmsDevsCovByMonomer

public PdbxRmsDevsCovByMonomer(String name)

Method Detail

getId

public IntColumn getId()

The value of _pdbx_rms_devs_cov_by_monomer.id must uniquely identify each item in the PDBX_RMS_DEVS_COV_BY_MONOMER list. This is an integer serial number.

Returns:

IntColumn

getModelId

public IntColumn getModelId()

The model number

Returns:

IntColumn

getAuthAsymId

public StrColumn getAuthAsymId()

This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelAsymId

public StrColumn getLabelAsymId()

This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelCompId

public StrColumn getLabelCompId()

This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.

Returns:

StrColumn

getAuthSeqId

public StrColumn getAuthSeqId()

This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.

Returns:

StrColumn

getLabelSeqId

public IntColumn getLabelSeqId()

This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.

Returns:

IntColumn

getRmsBonds

public FloatColumn getRmsBonds()

RMS deviation for all bonds in this monomer relative to small molecule crystal standards.

Returns:

FloatColumn

getNumBonds

public IntColumn getNumBonds()

Total number of bonds in calculation of _pdbx_rms_devs_cov_by_monomer.rms_bonds.

Returns:

IntColumn

getRmsAngles

public FloatColumn getRmsAngles()

RMS deviation for all angles in this monomer relative to small molecule crystal standards.

Returns:

FloatColumn

getNumAngles

public IntColumn getNumAngles()

Total number of angles in calculation of _pdbx_rms_devs_cov_by_monomer.rms_angles.

Returns:

IntColumn