java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.PdbxRemediationAtomSiteMapping

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxRemediationAtomSiteMapping
extends BaseCategory
```
Data items in the PDBX_REMEDIATION_ATOM_SITE_MAPPING category records mapping information between selected molecular entities that have been chemically redefined. The prior and current atom nomenclature is tabulated in this category.

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`PdbxRemediationAtomSiteMapping(String name)`
`PdbxRemediationAtomSiteMapping(String name, int rowCount, Object[] encodedColumns)`
`PdbxRemediationAtomSiteMapping(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StrColumn`	`getAuthAltId()`	A component of the current atom_site identifier labeling alternate locations.
`StrColumn`	`getAuthAsymId()`	A component of the current atom_site identifier.
`StrColumn`	`getAuthAtomId()`	A component of the current atom_site identifier.
`StrColumn`	`getAuthCompId()`	A component of the current atom_site identifier.
`StrColumn`	`getAuthSeqId()`	A component of the current atom_site identifier.
`StrColumn`	`getGroupPDB()`	The PDB group of atoms to which the atom site belongs.
`StrColumn`	`getId()`	The value of pdbx_remediation_atom_site_mapping.id must uniquely identify a record in the PDBX_REMEDIATION_ATOM_SITE_MAPPING list.
`StrColumn`	`getLabelAltId()`	A component of the atom_site identifier.
`StrColumn`	`getLabelAsymId()`	A component of the atom_site identifier.
`StrColumn`	`getLabelAtomId()`	A component of the atom_site identifier.
`StrColumn`	`getLabelCompId()`	A component of the atom_site identifier.
`IntColumn`	`getLabelSeqId()`	A component of the atom_site identifier.
`FloatColumn`	`getOccupancy()`	The fraction of the atom type present at the current atom site.
`StrColumn`	`getPDBInsCode()`	Optional atom_site identifier.
`IntColumn`	`getPdbxAlign()`	An optional alignment flag.
`StrColumn`	`getPreAuthAltId()`	A component of the prior atom_site identifier.
`StrColumn`	`getPreAuthAsymId()`	A component of the prior atom_site identifier.
`StrColumn`	`getPreAuthAtomId()`	A component of the prior atom_site identifier.
`StrColumn`	`getPreAuthCompId()`	A component of the prior atom_site identifier.
`StrColumn`	`getPreAuthSeqId()`	A component of the prior atom_site identifier.
`StrColumn`	`getPreGroupPDB()`	A component of the prior atom_site identifier.
`FloatColumn`	`getPreOccupancy()`	The fraction of the atom type present for the prior atom site.
`StrColumn`	`getPrePDBInsCode()`	A component of the prior atom_site identifier.
`IntColumn`	`getPrePdbxAlign()`	An optional alignment flag.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - PdbxRemediationAtomSiteMapping
```
public PdbxRemediationAtomSiteMapping(String name,
                                      Map<String,Column> columns)
```
  - PdbxRemediationAtomSiteMapping
```
public PdbxRemediationAtomSiteMapping(String name,
                                      int rowCount,
                                      Object[] encodedColumns)
```
  - PdbxRemediationAtomSiteMapping
```
public PdbxRemediationAtomSiteMapping(String name)
```
- Method Detail
  - getId
```
public StrColumn getId()
```
    The value of pdbx_remediation_atom_site_mapping.id must uniquely identify a record in the PDBX_REMEDIATION_ATOM_SITE_MAPPING list. Note that this item need not be a number; it can be any unique identifier.
    
    Returns:
    
    StrColumn
  - getGroupPDB
```
public StrColumn getGroupPDB()
```
    The PDB group of atoms to which the atom site belongs.
    
    Returns:
    
    StrColumn
  - getLabelAltId
```
public StrColumn getLabelAltId()
```
    A component of the atom_site identifier. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelAsymId
```
public StrColumn getLabelAsymId()
```
    A component of the atom_site identifier. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelAtomId
```
public StrColumn getLabelAtomId()
```
    A component of the atom_site identifier. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelCompId
```
public StrColumn getLabelCompId()
```
    A component of the atom_site identifier. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getLabelSeqId
```
public IntColumn getLabelSeqId()
```
    A component of the atom_site identifier. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
    
    Returns:
    
    IntColumn
  - getPdbxAlign
```
public IntColumn getPdbxAlign()
```
    An optional alignment flag.
    
    Returns:
    
    IntColumn
  - getPDBInsCode
```
public StrColumn getPDBInsCode()
```
    Optional atom_site identifier. This data item is a pointer to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPreAuthAsymId
```
public StrColumn getPreAuthAsymId()
```
    A component of the prior atom_site identifier. This data item corresponds to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPreAuthAtomId
```
public StrColumn getPreAuthAtomId()
```
    A component of the prior atom_site identifier. This data item corrresponds to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPreAuthCompId
```
public StrColumn getPreAuthCompId()
```
    A component of the prior atom_site identifier. This data item corresponds to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPreAuthSeqId
```
public StrColumn getPreAuthSeqId()
```
    A component of the prior atom_site identifier. This data item corresponds to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPrePDBInsCode
```
public StrColumn getPrePDBInsCode()
```
    A component of the prior atom_site identifier. This data item corresponds to _atom_site.pdbx_PDB_ins_code in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPreGroupPDB
```
public StrColumn getPreGroupPDB()
```
    A component of the prior atom_site identifier. This item corresponds to the PDB group of atoms to which the atom site belongs.
    
    Returns:
    
    StrColumn
  - getPreAuthAltId
```
public StrColumn getPreAuthAltId()
```
    A component of the prior atom_site identifier. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getPrePdbxAlign
```
public IntColumn getPrePdbxAlign()
```
    An optional alignment flag.
    
    Returns:
    
    IntColumn
  - getAuthAsymId
```
public StrColumn getAuthAsymId()
```
    A component of the current atom_site identifier. This data item corresponds to _atom_site.auth_asym_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthAtomId
```
public StrColumn getAuthAtomId()
```
    A component of the current atom_site identifier. This data item corrresponds to _atom_site.auth_atom_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthCompId
```
public StrColumn getAuthCompId()
```
    A component of the current atom_site identifier. This data item corresponds to _atom_site.auth_comp_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthSeqId
```
public StrColumn getAuthSeqId()
```
    A component of the current atom_site identifier. This data item corresponds to _atom_site.auth_seq_id in the ATOM_SITE category.
    
    Returns:
    
    StrColumn
  - getAuthAltId
```
public StrColumn getAuthAltId()
```
    A component of the current atom_site identifier labeling alternate locations.
    
    Returns:
    
    StrColumn
  - getOccupancy
```
public FloatColumn getOccupancy()
```
    The fraction of the atom type present at the current atom site.
    
    Returns:
    
    FloatColumn
  - getPreOccupancy
```
public FloatColumn getPreOccupancy()
```
    The fraction of the atom type present for the prior atom site.
    
    Returns:
    
    FloatColumn

Class PdbxRemediationAtomSiteMapping

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

PdbxRemediationAtomSiteMapping

PdbxRemediationAtomSiteMapping

PdbxRemediationAtomSiteMapping

Method Detail

getId

getGroupPDB

getLabelAltId

getLabelAsymId

getLabelAtomId

getLabelCompId

getLabelSeqId

getPdbxAlign

getPDBInsCode

getPreAuthAsymId

getPreAuthAtomId

getPreAuthCompId

getPreAuthSeqId

getPrePDBInsCode

getPreGroupPDB

getPreAuthAltId

getPrePdbxAlign

getAuthAsymId

getAuthAtomId

getAuthCompId

getAuthSeqId

getAuthAltId

getOccupancy

getPreOccupancy