java.lang.Object
- org.rcsb.cif.model.BaseCategory
- - org.rcsb.cif.model.generated.PdbxRefineTls

All Implemented Interfaces:

Category
```
@Generated("org.rcsb.cif.generator.SchemaGenerator")
public class PdbxRefineTls
extends BaseCategory
```
Data items in the REFINE_TLS category record details about TLS parameters used in structure refinement. Note that the intention is primarily to describe directly refined TLS parameters, although other methods of obtaining TLS parameters may be covered, see item _pdbx_refine_tls.method

Field Summary
- Fields inherited from class org.rcsb.cif.model.BaseCategory
  isText, textFields

Constructor Summary

Constructors
Constructor	Description
`PdbxRefineTls(String name)`
`PdbxRefineTls(String name, int rowCount, Object[] encodedColumns)`
`PdbxRefineTls(String name, Map<String,Column> columns)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`StrColumn`	`getDetails()`	A description of the TLS group, such as a domain name or a chemical group name.
`StrColumn`	`getId()`	The value of _pdbx_refine_tls.id must uniquely identify a record in the PDBX_REFINE_TLS list.
`FloatColumn`	`getL11()`	The elements of the libration tensor L.
`FloatColumn`	`getL11Esd()`	The estimated standard deviation of _pdbx_refine_tls.L.
`FloatColumn`	`getL12()`	The elements of the libration tensor L.
`FloatColumn`	`getL12Esd()`	The estimated standard deviation of _pdbx_refine_tls.L.
`FloatColumn`	`getL13()`	The elements of the libration tensor L.
`FloatColumn`	`getL13Esd()`	The estimated standard deviation of _pdbx_refine_tls.L.
`FloatColumn`	`getL22()`	The elements of the libration tensor L.
`FloatColumn`	`getL22Esd()`	The estimated standard deviation of _pdbx_refine_tls.L.
`FloatColumn`	`getL23()`	The elements of the libration tensor L.
`FloatColumn`	`getL23Esd()`	The estimated standard deviation of _pdbx_refine_tls.L.
`FloatColumn`	`getL33()`	The elements of the libration tensor L.
`FloatColumn`	`getL33Esd()`	The estimated standard deviation of _pdbx_refine_tls.L.
`StrColumn`	`getMethod()`	The method by which the TLS parameters were obtained.
`FloatColumn`	`getOriginX()`	The x coordinate in angstroms of the origin to which the TLS parameters are referred, specified according to a set of orthogonal Cartesian axes related to the cell axes as given in _atom_sites.Cartn_transform_axes.
`FloatColumn`	`getOriginY()`	The y coordinate in angstroms of the origin to which the TLS parameters are referred, specified according to a set of orthogonal Cartesian axes related to the cell axes as given in _atom_sites.Cartn_transform_axes.
`FloatColumn`	`getOriginZ()`	The z coordinate in angstroms of the origin to which the TLS parameters are referred, specified according to a set of orthogonal Cartesian axes related to the cell axes as given in _atom_sites.Cartn_transform_axes.
`StrColumn`	`getPdbxRefineId()`	This data item uniquely identifies a refinement within an entry.
`FloatColumn`	`getS11()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS11Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getS12()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS12Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getS13()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS13Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getS21()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS21Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getS22()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS22Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getS23()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS23Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getS31()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS31Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getS32()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS32Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getS33()`	The elements of the screw-rotation tensor S.
`FloatColumn`	`getS33Esd()`	The estimated standard deviation of _pdbx_refine_tls.S.
`FloatColumn`	`getT11()`	The elements of the translation tensor T.
`FloatColumn`	`getT11Esd()`	The estimated standard deviation of _pdbx_refine_tls.T.
`FloatColumn`	`getT12()`	The elements of the translation tensor T.
`FloatColumn`	`getT12Esd()`	The estimated standard deviation of _pdbx_refine_tls.T.
`FloatColumn`	`getT13()`	The elements of the translation tensor T.
`FloatColumn`	`getT13Esd()`	The estimated standard deviation of _pdbx_refine_tls.T.
`FloatColumn`	`getT22()`	The elements of the translation tensor T.
`FloatColumn`	`getT22Esd()`	The estimated standard deviation of _pdbx_refine_tls.T.
`FloatColumn`	`getT23()`	The elements of the translation tensor T.
`FloatColumn`	`getT23Esd()`	The estimated standard deviation of _pdbx_refine_tls.T.
`FloatColumn`	`getT33()`	The elements of the translation tensor T.
`FloatColumn`	`getT33Esd()`	The estimated standard deviation of _pdbx_refine_tls.T.

Methods inherited from class org.rcsb.cif.model.BaseCategory
getBinaryColumn, getCategoryName, getColumn, getColumnNames, getRowCount, isDefined

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category
columnNames, columns, get

- Constructor Detail
  - PdbxRefineTls
```
public PdbxRefineTls(String name,
                     Map<String,Column> columns)
```
  - PdbxRefineTls
```
public PdbxRefineTls(String name,
                     int rowCount,
                     Object[] encodedColumns)
```
  - PdbxRefineTls
```
public PdbxRefineTls(String name)
```
- Method Detail
  - getId
```
public StrColumn getId()
```
    The value of _pdbx_refine_tls.id must uniquely identify a record in the PDBX_REFINE_TLS list. Note that this item need not be a number; it can be any unique identifier.
    
    Returns:
    
    StrColumn
  - getPdbxRefineId
```
public StrColumn getPdbxRefineId()
```
    This data item uniquely identifies a refinement within an entry. _pdbx_refine_tls.pdbx_refine_id can be used to distinguish the results of joint refinements.
    
    Returns:
    
    StrColumn
  - getDetails
```
public StrColumn getDetails()
```
    A description of the TLS group, such as a domain name or a chemical group name.
    
    Returns:
    
    StrColumn
  - getMethod
```
public StrColumn getMethod()
```
    The method by which the TLS parameters were obtained.
    
    Returns:
    
    StrColumn
  - getOriginX
```
public FloatColumn getOriginX()
```
    The x coordinate in angstroms of the origin to which the TLS parameters are referred, specified according to a set of orthogonal Cartesian axes related to the cell axes as given in _atom_sites.Cartn_transform_axes. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getOriginY
```
public FloatColumn getOriginY()
```
    The y coordinate in angstroms of the origin to which the TLS parameters are referred, specified according to a set of orthogonal Cartesian axes related to the cell axes as given in _atom_sites.Cartn_transform_axes. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getOriginZ
```
public FloatColumn getOriginZ()
```
    The z coordinate in angstroms of the origin to which the TLS parameters are referred, specified according to a set of orthogonal Cartesian axes related to the cell axes as given in _atom_sites.Cartn_transform_axes. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getT11
```
public FloatColumn getT11()
```
    The elements of the translation tensor T. This should be given in the same coordinate frame and units as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getT11Esd
```
public FloatColumn getT11Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.T.
    
    Returns:
    
    FloatColumn
  - getT12
```
public FloatColumn getT12()
```
    The elements of the translation tensor T. This should be given in the same coordinate frame and units as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getT12Esd
```
public FloatColumn getT12Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.T.
    
    Returns:
    
    FloatColumn
  - getT13
```
public FloatColumn getT13()
```
    The elements of the translation tensor T. This should be given in the same coordinate frame and units as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getT13Esd
```
public FloatColumn getT13Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.T.
    
    Returns:
    
    FloatColumn
  - getT22
```
public FloatColumn getT22()
```
    The elements of the translation tensor T. This should be given in the same coordinate frame and units as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getT22Esd
```
public FloatColumn getT22Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.T.
    
    Returns:
    
    FloatColumn
  - getT23
```
public FloatColumn getT23()
```
    The elements of the translation tensor T. This should be given in the same coordinate frame and units as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getT23Esd
```
public FloatColumn getT23Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.T.
    
    Returns:
    
    FloatColumn
  - getT33
```
public FloatColumn getT33()
```
    The elements of the translation tensor T. This should be given in the same coordinate frame and units as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getT33Esd
```
public FloatColumn getT33Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.T.
    
    Returns:
    
    FloatColumn
  - getL11
```
public FloatColumn getL11()
```
    The elements of the libration tensor L. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getL11Esd
```
public FloatColumn getL11Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.L.
    
    Returns:
    
    FloatColumn
  - getL12
```
public FloatColumn getL12()
```
    The elements of the libration tensor L. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getL12Esd
```
public FloatColumn getL12Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.L.
    
    Returns:
    
    FloatColumn
  - getL13
```
public FloatColumn getL13()
```
    The elements of the libration tensor L. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getL13Esd
```
public FloatColumn getL13Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.L.
    
    Returns:
    
    FloatColumn
  - getL22
```
public FloatColumn getL22()
```
    The elements of the libration tensor L. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getL22Esd
```
public FloatColumn getL22Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.L.
    
    Returns:
    
    FloatColumn
  - getL23
```
public FloatColumn getL23()
```
    The elements of the libration tensor L. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getL23Esd
```
public FloatColumn getL23Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.L.
    
    Returns:
    
    FloatColumn
  - getL33
```
public FloatColumn getL33()
```
    The elements of the libration tensor L. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters.
    
    Returns:
    
    FloatColumn
  - getL33Esd
```
public FloatColumn getL33Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.L.
    
    Returns:
    
    FloatColumn
  - getS11
```
public FloatColumn getS11()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. The trace of S is indeterminate by crystallography, and should be set to zero.
    
    Returns:
    
    FloatColumn
  - getS11Esd
```
public FloatColumn getS11Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn
  - getS12
```
public FloatColumn getS12()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getS12Esd
```
public FloatColumn getS12Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn
  - getS13
```
public FloatColumn getS13()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getS13Esd
```
public FloatColumn getS13Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn
  - getS21
```
public FloatColumn getS21()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getS21Esd
```
public FloatColumn getS21Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn
  - getS22
```
public FloatColumn getS22()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. The trace of S is indeterminate by crystallography, and should be set to zero.
    
    Returns:
    
    FloatColumn
  - getS22Esd
```
public FloatColumn getS22Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn
  - getS23
```
public FloatColumn getS23()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getS23Esd
```
public FloatColumn getS23Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn
  - getS31
```
public FloatColumn getS31()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getS31Esd
```
public FloatColumn getS31Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn
  - getS32
```
public FloatColumn getS32()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. If the origin is omitted, it is assumed to be the centre of reaction of the group, in which case S must be symmetric
    
    Returns:
    
    FloatColumn
  - getS32Esd
```
public FloatColumn getS32Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn
  - getS33
```
public FloatColumn getS33()
```
    The elements of the screw-rotation tensor S. This should be given in the same coordinate frame as the corresponding anisotropic displacement parameters. The trace of S is indeterminate by crystallography, and should be set to zero.
    
    Returns:
    
    FloatColumn
  - getS33Esd
```
public FloatColumn getS33Esd()
```
    The estimated standard deviation of _pdbx_refine_tls.S.
    
    Returns:
    
    FloatColumn

Class PdbxRefineTls

Field Summary

Fields inherited from class org.rcsb.cif.model.BaseCategory

Constructor Summary

Method Summary

Methods inherited from class org.rcsb.cif.model.BaseCategory

Methods inherited from class java.lang.Object

Methods inherited from interface org.rcsb.cif.model.Category

Constructor Detail

PdbxRefineTls

PdbxRefineTls

PdbxRefineTls

Method Detail

getId

getPdbxRefineId

getDetails

getMethod

getOriginX

getOriginY

getOriginZ

getT11

getT11Esd

getT12

getT12Esd

getT13

getT13Esd

getT22

getT22Esd

getT23

getT23Esd

getT33

getT33Esd

getL11

getL11Esd

getL12

getL12Esd

getL13

getL13Esd

getL22

getL22Esd

getL23

getL23Esd

getL33

getL33Esd

getS11

getS11Esd

getS12

getS12Esd

getS13

getS13Esd

getS21

getS21Esd

getS22

getS22Esd

getS23

getS23Esd

getS31

getS31Esd

getS32

getS32Esd

getS33

getS33Esd